Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0040
(712 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 89 3e-18
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 89 3e-18
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 72 4e-13
03_03_0006 - 13666961-13667755 36 0.042
01_04_0015 - 15103044-15103191,15103253-15103313,15104580-151046... 29 2.8
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 29 3.6
09_04_0300 - 16488358-16488447,16488684-16489116,16489377-164896... 29 3.6
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 29 3.6
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 29 3.6
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485... 28 6.4
12_01_0696 + 5936869-5937068,5937705-5938179,5938240-5938665 28 8.4
11_01_0204 - 1612505-1612636,1612809-1612926,1613050-1613162,161... 28 8.4
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 28 8.4
06_03_0392 + 20318728-20319309,20319596-20319725,20319844-203198... 28 8.4
03_06_0532 - 34562151-34562225,34562958-34563161 28 8.4
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 28 8.4
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 89.0 bits (211), Expect = 3e-18
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = +1
Query: 256 RDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 426
+DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 42 KDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 98
Score = 63.7 bits (148), Expect = 1e-10
Identities = 33/69 (47%), Positives = 44/69 (63%)
Frame = +3
Query: 501 KEANTIRSGTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALCRKMGVTILHCQGANPA 680
K+ ++ G N VT L+E+ KA L HDVDPIELV++LPALCRKM V +G
Sbjct: 123 KKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKG-KAR 181
Query: 681 FGALVHRXT 707
G++VH+ T
Sbjct: 182 LGSIVHKKT 190
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 197 NPLFEKRPKNFAIGQGIQP 253
NPLFEKRPK F IG + P
Sbjct: 22 NPLFEKRPKQFGIGGALPP 40
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 89.0 bits (211), Expect = 3e-18
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = +1
Query: 256 RDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 426
+DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 26 KDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE 82
Score = 57.6 bits (133), Expect = 9e-09
Identities = 27/49 (55%), Positives = 35/49 (71%)
Frame = +3
Query: 501 KEANTIRSGTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALCRKMGV 647
K+ ++ G N VT L+E+ KA L HDVDPIELV++LPALCRKM +
Sbjct: 107 KKPIVVKYGLNHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEI 155
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 197 NPLFEKRPKNFAIGQGIQP 253
NPLFEKRPK F IG + P
Sbjct: 6 NPLFEKRPKQFGIGGALPP 24
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 72.1 bits (169), Expect = 4e-13
Identities = 32/57 (56%), Positives = 44/57 (77%)
Frame = +1
Query: 256 RDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 426
+DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 43 KDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAE 99
Score = 61.3 bits (142), Expect = 7e-10
Identities = 31/69 (44%), Positives = 44/69 (63%)
Frame = +3
Query: 501 KEANTIRSGTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALCRKMGVTILHCQGANPA 680
K+ ++ G + VT L+E+ KA L HDVDPIELV++LPALCRKM + +G
Sbjct: 108 KKPIVVKYGLDHVTYLIEQSKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKG-KAR 166
Query: 681 FGALVHRXT 707
G++VH+ T
Sbjct: 167 LGSIVHKKT 175
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2
Query: 197 NPLFEKRPKNFAIGQGIQP 253
NPLFEKRPK F IG + P
Sbjct: 23 NPLFEKRPKQFGIGGALPP 41
>03_03_0006 - 13666961-13667755
Length = 264
Score = 35.5 bits (78), Expect = 0.042
Identities = 21/64 (32%), Positives = 25/64 (39%)
Frame = +2
Query: 497 HQRGQHHPIRHKHSHQAGREEEGALVVIAS*C*SY*AGSLPASVMP*NGCNHTALSRGKS 676
H G HH +RH+H H R G V+ GS + P N TA RG
Sbjct: 95 HGGGDHHRVRHRHRHHRDRGRRGHAAVVDLSALVAGNGSGSTQIAPAVAGNDTAGHRGNR 154
Query: 677 RLRG 688
RG
Sbjct: 155 TARG 158
>01_04_0015 -
15103044-15103191,15103253-15103313,15104580-15104643,
15104820-15104962,15105031-15105127
Length = 170
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/71 (26%), Positives = 36/71 (50%)
Frame = +1
Query: 202 SLREEAKELCYWSGHSANRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 381
+L + KE CY H+ + ++ FV W + I R + +L R + + + T ++ T
Sbjct: 68 NLLVKRKEQCYTWWHTQDEVMTNFVEW---MFIYRDEGILSRTIPLSESAARGTLQME-T 123
Query: 382 TAKGLFKILEK 414
+ + L K LE+
Sbjct: 124 SDEALLKALEQ 134
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +3
Query: 480 QER*ASTKEANTIRSGTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALCRKMGV 647
QE + ++ G N TK + + A D +P+E++L LP L V
Sbjct: 21 QELVSQAANYKQLKKGANEATKTLNRGIAEFVVMAADAEPLEILLHLPLLAEDKNV 76
>09_04_0300 -
16488358-16488447,16488684-16489116,16489377-16489642,
16490015-16490044,16490282-16490606,16491752-16492035,
16492154-16492376,16493117-16493173,16494454-16494947
Length = 733
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 534 CLCRIGWCWPLWWRLIFLGNLSFSSFPQ 451
C +G WW L+FL N +SFPQ
Sbjct: 70 CCWLVGCVCSAWWLLLFLYNAMPASFPQ 97
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/52 (21%), Positives = 26/52 (50%)
Frame = +3
Query: 504 EANTIRSGTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALCRKMGVTILH 659
EA ++ G V K + + + L ++ PI+++ +P LC + + ++
Sbjct: 41 EAKCLKRGVKEVVKSIRRGQKGLCIIAGNISPIDVITHVPILCEEANIPYVY 92
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/52 (21%), Positives = 25/52 (48%)
Frame = +3
Query: 504 EANTIRSGTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALCRKMGVTILH 659
EA ++ G V K + + L ++ PI+++ +P LC + + ++
Sbjct: 41 EAKCLKRGVKEVVKSIRRGNKGLCVIAGNISPIDVITHVPILCEEANIPYIY 92
>05_03_0235 -
10747649-10748118,10748226-10748314,10748477-10748574,
10748934-10749046,10749107-10749200,10749557-10749589,
10749734-10749851,10750110-10750210,10751036-10751233,
10751337-10751471,10751752-10751830,10753650-10753738,
10753835-10753987,10754100-10754285
Length = 651
Score = 28.3 bits (60), Expect = 6.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 497 HQRGQHHPIRHKHSHQAG 550
HQ+G+HH H H H+ G
Sbjct: 530 HQKGRHHRHHHDHRHRHG 547
>12_01_0696 + 5936869-5937068,5937705-5938179,5938240-5938665
Length = 366
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 505 RPTPSDPAQTQSPSWSRRRR 564
RPT S P + PSW RRR
Sbjct: 95 RPTSSPPLRLPPPSWQARRR 114
>11_01_0204 -
1612505-1612636,1612809-1612926,1613050-1613162,
1613640-1613712,1613797-1613936,1614059-1614129,
1614262-1614430,1614625-1614690,1615081-1615179,
1615298-1615471,1615745-1615823,1615929-1616035,
1616395-1616439
Length = 461
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -1
Query: 274 QIWTSHDWLNALTNSKVLWPLLEERIHNFLGLNLFDHQWGGGY 146
++W +LN+L S + ++RIHN + + +F GY
Sbjct: 190 EVWDFSSFLNSLAESGAVAHNEDDRIHNHVPVKIFGSHKDEGY 232
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 241 GHSANRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFT 363
GHS +RD RF + + + R ++ + +PPP FT
Sbjct: 1039 GHSLHRDCLRFYGFGEMVACFRYASIKVHSVYLPPPKLDFT 1079
>06_03_0392 +
20318728-20319309,20319596-20319725,20319844-20319895,
20319995-20320061,20320547-20320633,20322526-20322567,
20322635-20322740,20323155-20323219,20323299-20323343,
20323442-20323549,20323636-20323723,20324147-20324193,
20324355-20324363
Length = 475
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 294 PHPASEGCTSASSESAPSDQP 356
P PA E +A+ E+APSD P
Sbjct: 53 PQPAPEEAPAAAEEAAPSDDP 73
>03_06_0532 - 34562151-34562225,34562958-34563161
Length = 92
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 555 KKKAHLWSSLHDVDPIELVLFLPALC 632
+K H W+ L D+ P + V+FL C
Sbjct: 34 RKATHKWAFLSDMSPRKFVIFLAGRC 59
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +3
Query: 201 LSSRRGQRTLLLVRAFSQS*LVQICKMAQVYPHPASEGCTSASSESAPSDQPIYP 365
L SRR + + RAF + + K P PA E TSAS+ + P P+ P
Sbjct: 158 LFSRRD--SFITHRAFCDALAEESAKARAAPPPPADEDGTSASAGAPPPQAPLPP 210
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,606,948
Number of Sequences: 37544
Number of extensions: 359791
Number of successful extensions: 1150
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -