Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0040
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)              94   9e-20
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)        63   2e-10
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)        33   0.17 
SB_46912| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.92 
SB_38231| Best HMM Match : Yippee (HMM E-Value=4)                      31   0.92 
SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.92 
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)          30   1.6  
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)               28   6.5  
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)           28   6.5  
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 94.3 bits (224), Expect = 9e-20
 Identities = 40/58 (68%), Positives = 50/58 (86%)
 Frame = +1

Query: 256 RDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 429
           RDLSRFVRWP+Y+++QRQK++L +RLKVPP INQFTQ LD+ +   LFK+L KYRPET
Sbjct: 49  RDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPET 106



 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 33/70 (47%), Positives = 43/70 (61%)
 Frame = +3

Query: 492 ASTKEANTIRSGTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALCRKMGVTILHCQGA 671
           A  K+   ++ G N +T LVE KKA L    HDVDPIE+V++LPALCRKM V     +G 
Sbjct: 128 APGKKPMLVKYGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKG- 186

Query: 672 NPAFGALVHR 701
               G +VH+
Sbjct: 187 KARLGKVVHK 196



 Score = 34.7 bits (76), Expect = 0.075
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = +2

Query: 197 NPLFEKRPKNFAIGQGIQP 253
           NPL EKRP+NF IG  IQP
Sbjct: 29  NPLIEKRPRNFGIGGDIQP 47


>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
          Length = 172

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 33/70 (47%), Positives = 43/70 (61%)
 Frame = +3

Query: 492 ASTKEANTIRSGTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALCRKMGVTILHCQGA 671
           A  K+   ++ G N +T LVE KKA L    HDVDPIE+V++LPALCRKM V     +G 
Sbjct: 37  APGKKPMLVKYGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKG- 95

Query: 672 NPAFGALVHR 701
               G +VH+
Sbjct: 96  KARLGKVVHK 105


>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
          Length = 187

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 516 IRSGTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALCRKMGV 647
           +R G N  TK + +  A       D +P+E++L LP LC    V
Sbjct: 94  LRKGANEATKCLNRGIAEFIVMAADTEPLEILLHLPLLCEDKNV 137


>SB_46912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 238 SGHSANRDLSRFVRWPKYIRIQRQKAVL 321
           SGH+ N+ LS+ ++W KYI  ++ K  L
Sbjct: 4   SGHAQNQRLSQSIQWNKYINCKKNKTNL 31


>SB_38231| Best HMM Match : Yippee (HMM E-Value=4)
          Length = 230

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 238 SGHSANRDLSRFVRWPKYIRIQRQKAVL 321
           SGH+ N+ LS+ ++W KYI  ++ K  L
Sbjct: 4   SGHAQNQRLSQSIQWNKYINCKKNKTNL 31


>SB_56575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 238 SGHSANRDLSRFVRWPKYIRIQRQKAVL 321
           SGH+ N+ LS+ ++W KYI  ++ K  L
Sbjct: 546 SGHAQNQRLSQSIQWNKYINCKKNKTNL 573


>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
          Length = 544

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +3

Query: 504 EANTIRSGTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALC 632
           +A T+R G   V K + K +        DV PI+++  +P +C
Sbjct: 95  KAKTLRRGVKEVVKALRKGEKGFVILAGDVSPIDVISHIPVMC 137


>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
          Length = 427

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = +3

Query: 525 GTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALCRKMGVTIL 656
           G +   K ++K++AHL    ++ D    V  + ALC + G+ +L
Sbjct: 41  GLHEAAKSLDKREAHLCILSNNCDEAMYVKLVEALCAEHGIPLL 84


>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
          Length = 212

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 507 PLWWRLIFLGNLSFSSFPQPLFPG 436
           P WW ++F+G + FS     L+PG
Sbjct: 56  PKWWFMLFIGTIVFSIGYLVLYPG 79


>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +3

Query: 318 TSASSESAPSDQPIYPDTG 374
           T+ASSE+APS  P  PD G
Sbjct: 43  TAASSEAAPSSAPSMPDYG 61


>SB_19395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 832

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 265 SRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEK 414
           SR  RW  Y R+   KA+LQR  ++   I Q T  + K        +L K
Sbjct: 508 SRTFRWDPYSRMSTLKALLQRMEQLKTQIVQETCEIKKLEKLSRLVLLRK 557


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,813,383
Number of Sequences: 59808
Number of extensions: 387982
Number of successful extensions: 1099
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)