Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0040
(712 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 90 2e-18
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 90 2e-18
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 89 2e-18
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 69 3e-12
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.022
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 32 0.47
U55370-1|AAA97993.3| 313|Caenorhabditis elegans Serpentine rece... 29 3.3
AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical ... 29 4.3
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 7.6
AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical ... 28 7.6
AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical ... 28 7.6
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 89.8 bits (213), Expect = 2e-18
Identities = 37/58 (63%), Positives = 49/58 (84%)
Frame = +1
Query: 256 RDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 429
+D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 50 KDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES 107
Score = 69.3 bits (162), Expect = 3e-12
Identities = 34/70 (48%), Positives = 45/70 (64%)
Frame = +3
Query: 498 TKEANTIRSGTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALCRKMGVTILHCQGANP 677
TK NT+R G NT+T+LVE ++A L HDV+P+E+VL LPALCRK V +G
Sbjct: 131 TKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKG-KA 189
Query: 678 AFGALVHRXT 707
+ G +V R T
Sbjct: 190 SLGTVVRRKT 199
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +2
Query: 197 NPLFEKRPKNFAIGQGIQP 253
NPLFEKR +NF IGQ IQP
Sbjct: 30 NPLFEKRARNFNIGQDIQP 48
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 89.8 bits (213), Expect = 2e-18
Identities = 37/58 (63%), Positives = 49/58 (84%)
Frame = +1
Query: 256 RDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 429
+D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 50 KDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES 107
Score = 69.3 bits (162), Expect = 3e-12
Identities = 34/70 (48%), Positives = 45/70 (64%)
Frame = +3
Query: 498 TKEANTIRSGTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALCRKMGVTILHCQGANP 677
TK NT+R G NT+T+LVE ++A L HDV+P+E+VL LPALCRK V +G
Sbjct: 111 TKRPNTVRHGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKG-KA 169
Query: 678 AFGALVHRXT 707
+ G +V R T
Sbjct: 170 SLGTVVRRKT 179
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +2
Query: 197 NPLFEKRPKNFAIGQGIQP 253
NPLFEKR +NF IGQ IQP
Sbjct: 30 NPLFEKRARNFNIGQDIQP 48
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 89.4 bits (212), Expect = 2e-18
Identities = 37/58 (63%), Positives = 49/58 (84%)
Frame = +1
Query: 256 RDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 429
+D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 153 KDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +2
Query: 197 NPLFEKRPKNFAIGQGIQP 253
NPLFEKR +NF IGQ IQP
Sbjct: 133 NPLFEKRARNFNIGQDIQP 151
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 68.9 bits (161), Expect = 3e-12
Identities = 28/40 (70%), Positives = 35/40 (87%)
Frame = +1
Query: 256 RDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 375
+D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 153 KDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Score = 35.9 bits (79), Expect = 0.029
Identities = 15/19 (78%), Positives = 16/19 (84%)
Frame = +2
Query: 197 NPLFEKRPKNFAIGQGIQP 253
NPLFEKR +NF IGQ IQP
Sbjct: 133 NPLFEKRARNFNIGQDIQP 151
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 36.3 bits (80), Expect = 0.022
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Frame = -2
Query: 528 CRIGWCWP-LWWRLIFLGNL-SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCL 364
C +G C L + + N SF SFP QP+ C +++P F+ N+EKA + C ++Q
Sbjct: 142 CFLGLCMAILQLSIAAVANYYSFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIG 201
Query: 363 GKLV 352
G+++
Sbjct: 202 GRII 205
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 31.9 bits (69), Expect = 0.47
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 516 IRSGTNTVTKLVEKKKAHLWSSLHDVDPIELVLFLPALCRKMGV 647
++ G N TK + + + + D +P+E++L LP LC V
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNV 78
>U55370-1|AAA97993.3| 313|Caenorhabditis elegans Serpentine
receptor, class x protein77 protein.
Length = 313
Score = 29.1 bits (62), Expect = 3.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 570 LWSSLHDVDPIELVLFLPALCRKMGVT 650
LW S+H +D I ++LF L RK VT
Sbjct: 264 LWQSIHVIDGIIMLLFNEGLSRKKRVT 290
>AC006790-9|AAF60735.1| 382|Caenorhabditis elegans Hypothetical
protein Y49F6B.9 protein.
Length = 382
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -2
Query: 696 VQVPRRRDLPLDNAVWLHPFYGITLAGREPAQ*DQHHEAMTTSAPSSS 553
VQ +RR++P+ + + ++G T++ P + + H SAP S
Sbjct: 315 VQKKKRREVPIADTFHVDGYHGATMSLAPPPEPEPEHRNADGSAPGPS 362
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 344 LRSTNLPRHWTRLQLRA 394
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>AC006722-2|AAK68422.1| 296|Caenorhabditis elegans Hypothetical
protein Y19D10A.9 protein.
Length = 296
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 294 PHPASEGCTSASSESAPSDQPIYPDTG 374
P S G T PSD PIYP +G
Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221
>AC006645-7|AAF39840.1| 296|Caenorhabditis elegans Hypothetical
protein F56A4.2 protein.
Length = 296
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 294 PHPASEGCTSASSESAPSDQPIYPDTG 374
P S G T PSD PIYP +G
Sbjct: 195 PFFGSSGATDFPVSGGPSDSPIYPASG 221
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,137,783
Number of Sequences: 27780
Number of extensions: 283571
Number of successful extensions: 814
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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