Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0039
         (441 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RLF0 Cluster: Asparagine-rich protein; n=5; Plasmodiu...    32   4.7  
UniRef50_Q662Q2 Cluster: Putative uncharacterized protein; n=3; ...    31   8.3  
UniRef50_A7JD90 Cluster: Putative uncharacterized protein; n=11;...    31   8.3  
UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD...    31   8.3  
UniRef50_P21421 Cluster: DNA-directed RNA polymerase subunit bet...    31   8.3  

>UniRef50_Q7RLF0 Cluster: Asparagine-rich protein; n=5; Plasmodium
           (Vinckeia)|Rep: Asparagine-rich protein - Plasmodium
           yoelii yoelii
          Length = 931

 Score = 32.3 bits (70), Expect = 4.7
 Identities = 20/54 (37%), Positives = 31/54 (57%)
 Frame = -2

Query: 392 KIKCYNIISYYYGL*LDLKFLVFMEIYFVLCNLNNHASKSLHTYFSFNTNISYT 231
           K +C+N ISYYY L    K+++F    F+L N+  H S+  + Y   N  +SY+
Sbjct: 600 KQECFNFISYYYNLNDISKWILF----FLLNNVQIHYSEDDNKY---NDTVSYS 646


>UniRef50_Q662Q2 Cluster: Putative uncharacterized protein; n=3;
           Borrelia burgdorferi group|Rep: Putative uncharacterized
           protein - Borrelia garinii
          Length = 454

 Score = 31.5 bits (68), Expect = 8.3
 Identities = 19/62 (30%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
 Frame = -2

Query: 404 TKLAKIKC-YNIIS--YYYGL*LDLKFLVFMEIYFVLC-NLNNHASKSLHTYFSFNTNIS 237
           TK+++ K  +NI+S  +Y+G  + + F +   I++ +  N+N++ S S + Y ++N N S
Sbjct: 283 TKISESKNEFNIMSNNFYFGFDIMIPFKIRNSIFYKINENINHYFSISTNYYTNYNENNS 342

Query: 236 YT 231
           +T
Sbjct: 343 FT 344


>UniRef50_A7JD90 Cluster: Putative uncharacterized protein; n=11;
           Francisella tularensis|Rep: Putative uncharacterized
           protein - Francisella tularensis subsp. tularensis
           FSC033
          Length = 423

 Score = 31.5 bits (68), Expect = 8.3
 Identities = 27/74 (36%), Positives = 34/74 (45%)
 Frame = -2

Query: 407 ITKLAKIKCYNIISYYYGL*LDLKFLVFMEIYFVLCNLNNHASKSLHTYFSFNTNISYT* 228
           I  L  I  Y IIS   G     KF+VF  I+ +L  LNN  S+ L    S    + Y  
Sbjct: 88  IMTLFIIILYKIISIDKGEIFSKKFIVFFSIFMILFGLNNSISQIL----SKTIALQYFL 143

Query: 227 GILINNNLVYFIGK 186
           GI +   L+YF  K
Sbjct: 144 GIAL---LIYFYYK 154


>UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD
           protein - Plasmodium falciparum
          Length = 960

 Score = 31.5 bits (68), Expect = 8.3
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
 Frame = -2

Query: 377 NIISYYYGL*LDLKFLVFMEIYFVLCN-LNNHASKSLHTYFSFNTNIS---YT*GILINN 210
           N I Y Y   +++       +++   N ++NH     + Y+ +N N++   Y   ILINN
Sbjct: 622 NYIKYLYKYNININLYFIKNLFYNNNNFIHNHIIYK-NNYYIYNNNMNLYQYNKNILINN 680

Query: 209 NLVY 198
           NL+Y
Sbjct: 681 NLLY 684


>UniRef50_P21421 Cluster: DNA-directed RNA polymerase subunit beta;
           n=5; Plasmodium|Rep: DNA-directed RNA polymerase subunit
           beta - Plasmodium falciparum
          Length = 1024

 Score = 31.5 bits (68), Expect = 8.3
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -2

Query: 392 KIKCYNIISYYYGL*LDLKFLVFMEIYFVLCN-LNNHASKSLHTYFSFNTNISYT*GILI 216
           KI  YN I + Y    ++  ++ ++++ +  N  NN     L+  FS   N SY     I
Sbjct: 201 KILIYNYIKFIYSKYNNINNIISLKLFIIKLNKFNNIYINLLNILFSIKLNFSYYSDFYI 260

Query: 215 NN 210
           NN
Sbjct: 261 NN 262


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 346,093,807
Number of Sequences: 1657284
Number of extensions: 5847664
Number of successful extensions: 9616
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9613
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22340008747
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)