Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0039
         (441 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    27   1.3  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    26   2.2  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    24   9.0  

>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -2

Query: 332 LVFMEIYFVLCNLNNHASKSLHTYFSFNTNISYT-*GILINNNLVYFIGKAS*KRDTNDL 156
           L+ + ++  L N +   S S++T +SF  N  YT       +N+ Y++     ++D + L
Sbjct: 271 LIVVILFAFLSNFSWSDSTSVNTRYSFQQNYKYTVPRTTAKHNIPYYMS----QKDLDKL 326

Query: 155 LAEDVRWL 132
            + D+R L
Sbjct: 327 SSRDIRRL 334


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +2

Query: 38  RHSQSENQTQLIYLKLRQFTNAEVNKLSIFILTSE 142
           RH+  +N+ + + L +  F N ++NK+S   + S+
Sbjct: 19  RHNTVDNKQEKLPLSIEIFLNKQINKISFDTIRSK 53


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = -2

Query: 299 NLNNHASKSLHTYFSFNTNISYT*GILINNNLVYFIGK 186
           NLN+H+S+SL   F    + SY  G LI+N++ + I K
Sbjct: 477 NLNSHSSQSLFELFQ---SASYP-GFLISNDVNHKILK 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,546,451
Number of Sequences: 5004
Number of extensions: 27056
Number of successful extensions: 41
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)