Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0038
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    24   5.1  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    24   5.1  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    24   5.1  
Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical pr...    28   7.8  
X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.      28   7.8  

>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 24.2 bits (50), Expect(2) = 5.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 482 PFAGSPPPPKIHS 520
           P AGSPPPP+  S
Sbjct: 280 PAAGSPPPPRTGS 292



 Score = 22.6 bits (46), Expect(2) = 5.1
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 470 KEFEPFAGSPPPP 508
           K   P AGSPPPP
Sbjct: 249 KRQAPPAGSPPPP 261


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 24.2 bits (50), Expect(2) = 5.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 482 PFAGSPPPPKIHS 520
           P AGSPPPP+  S
Sbjct: 265 PAAGSPPPPRTGS 277



 Score = 22.6 bits (46), Expect(2) = 5.1
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 470 KEFEPFAGSPPPP 508
           K   P AGSPPPP
Sbjct: 234 KRQAPPAGSPPPP 246


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 24.2 bits (50), Expect(2) = 5.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 482 PFAGSPPPPKIHS 520
           P AGSPPPP+  S
Sbjct: 259 PAAGSPPPPRTGS 271



 Score = 22.6 bits (46), Expect(2) = 5.1
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +2

Query: 470 KEFEPFAGSPPPP 508
           K   P AGSPPPP
Sbjct: 228 KRQAPPAGSPPPP 240


>Z72504-5|CAA96602.2|  812|Caenorhabditis elegans Hypothetical
           protein C29E6.1a protein.
          Length = 812

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
 Frame = -3

Query: 664 GCVSTQSFSXDDVECPRQRSLPSFRSQARLD-YSWVYQIIYPI*GSVCRRMNLRWGRRSG 488
           GC S  S   D V   +Q    +   QA  D +S +  +  P      +  N+     + 
Sbjct: 52  GCQSACSLGEDPVSPGKQLECAAVNHQASPDGFSHLCAVFQPH-----QLQNVDGYVEAD 106

Query: 487 ERFKFFCWFCLHPYRKCKSIFNF 419
           +RF F+  +CL   RKC   + F
Sbjct: 107 DRFTFYWKYCLPSTRKCSGEYAF 129


>Z72504-4|CAH60755.1|  653|Caenorhabditis elegans Hypothetical
           protein C29E6.1b protein.
          Length = 653

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
 Frame = -3

Query: 664 GCVSTQSFSXDDVECPRQRSLPSFRSQARLD-YSWVYQIIYPI*GSVCRRMNLRWGRRSG 488
           GC S  S   D V   +Q    +   QA  D +S +  +  P      +  N+     + 
Sbjct: 52  GCQSACSLGEDPVSPGKQLECAAVNHQASPDGFSHLCAVFQPH-----QLQNVDGYVEAD 106

Query: 487 ERFKFFCWFCLHPYRKCKSIFNF 419
           +RF F+  +CL   RKC   + F
Sbjct: 107 DRFTFYWKYCLPSTRKCSGEYAF 129


>X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.
          Length = 693

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 22/83 (26%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
 Frame = -3

Query: 664 GCVSTQSFSXDDVECPRQRSLPSFRSQARLD-YSWVYQIIYPI*GSVCRRMNLRWGRRSG 488
           GC S  S   D V   +Q    +   QA  D +S +  +  P      +  N+     + 
Sbjct: 52  GCQSACSLGEDPVSPGKQLECAAVNHQASPDGFSHLCAVFQPH-----QLQNVDGYVEAD 106

Query: 487 ERFKFFCWFCLHPYRKCKSIFNF 419
           +RF F+  +CL   RKC   + F
Sbjct: 107 DRFTFYWKYCLPSTRKCSGEYAF 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,561,170
Number of Sequences: 27780
Number of extensions: 288914
Number of successful extensions: 796
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)