Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0038
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          25   0.96 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.2  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   5.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   8.9  

>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 24.6 bits (51), Expect = 0.96
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 495 DPANGSNSFVGFVFIHTGSVNPSLISGSLEAIFIT 391
           DP   S++++GF+F+    V    I  S  AI +T
Sbjct: 57  DPVTNSDTYIGFLFVLGLIVPVFTIVSSYAAIVLT 91


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 428  DGFTLPVWMKTKPTKEFEPFAGSPPPP 508
            +G  +P +M+  P   F PF    PPP
Sbjct: 1142 NGIKMPSFMEGMPHLPFTPFNFWNPPP 1168


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = -2

Query: 341 FNKYNKQTTRQFNTKWYY 288
           +N YN      +N K YY
Sbjct: 330 YNNYNNNNYNNYNKKLYY 347


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 188 ILYLFNNYVFCCLLNYVINLYFF 256
           + Y+FN  + C L+N V  L F+
Sbjct: 214 MFYVFNLILPCILINSVALLVFY 236


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 640 SXDDVECPRQRSLPSFRSQARLDYSWVYQ 554
           S DDV+  R   + S++S  + D    YQ
Sbjct: 129 SLDDVKILRNDRIDSYKSNLKCDKCSTYQ 157


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 556 GKPTNSQDALVNETKEVTAASGIQRRQXRKTGS 654
           GK       + NE++  + AS  + +  RK+G+
Sbjct: 214 GKRKRKSSTIENESETESNASSTKTKMRRKSGA 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,893
Number of Sequences: 438
Number of extensions: 4151
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)