Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0037
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    29   0.48 
SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated pro...    29   0.48 
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    28   0.84 
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    27   2.0  
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    26   4.5  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   7.9  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    25   7.9  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   7.9  

>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 454 KTSSISSSQQKRQTASSLCRSFGPGKESRYN 546
           ++ S SS  Q+   A++L RS GPG    YN
Sbjct: 56  QSRSFSSPHQRAHNAAALARSGGPGFSMNYN 86


>SPAC15E1.07c |moa1|mug159|meiotic cohesin complex associated
           protein Moa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 172

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 70  HKTSVRYLINISNNRNQEAIAAEIGFFHPRLDKEVVIKSNAVF 198
           H    R + NI N + +++I  +  ++H +   E +IK+ A F
Sbjct: 120 HVPDERLVSNIKNTQTKDSITRDSAYYHRKTMTESIIKTLAAF 162


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -1

Query: 403 NLACWVFALLCTSTVPSKSIT-FTNGVWAKKTNLV 302
           N  CW+F  +     P++S++ FT+G+ AK+ NL+
Sbjct: 215 NFVCWLFDNM-EKDAPTESVSNFTDGINAKQLNLM 248


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 8/37 (21%), Positives = 21/37 (56%)
 Frame = -1

Query: 544 YIYSLFRDQMTDIESLRSASSVVNSKYWKSFARAWTL 434
           Y+ + F+D++ +I + ++  +V++   W    R W +
Sbjct: 58  YLLTTFKDRVNEIINEQNEENVIDQSRWSKLWRIWNV 94


>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 34  EACLDLDKKKQGHKTSVRYLINISNNRNQEAIAAEIGFFHPRLDKEV 174
           EA + +DK K   K +        +N+N      ++GFF P+ + ++
Sbjct: 160 EAVMQMDKSKSRFKGAETEYNRALDNKNTGDSQKKVGFFKPKSNAQL 206


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -1

Query: 403 NLACWVFALLCTSTVPSKSITFTNGVWAK--KTNLVGETSNNSLETRSAP 260
           N A W  AL  T  VPS ++T T  +  K  K+  V      +LET S P
Sbjct: 28  NGATWASALQSTKDVPSHALTKTIVLKPKTAKSQTVVPIILAALETTSTP 77


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 349 SITFTNGVWAKKTNLVGET 293
           S+T TN +W  KT LV ++
Sbjct: 147 SVTLTNPIWVVKTRLVTQS 165


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -1

Query: 370 TSTVPSKSITFTNGVWAKKTNLVGETSNNSLETRSAPRESDI 245
           T+T P  S  FT      KTNL+ E + N    +    E ++
Sbjct: 717 TTTAPQFSFNFTKPNTDAKTNLLPEKTFNEEAVKQKETEKEV 758


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,301
Number of Sequences: 5004
Number of extensions: 49105
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)