Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0037
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.0  
SB_30187| Best HMM Match : ShlB (HMM E-Value=8.7)                      29   2.0  
SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.7  
SB_14508| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_8738| Best HMM Match : UPF0233 (HMM E-Value=4.3)                    28   4.7  
SB_40133| Best HMM Match : Tat (HMM E-Value=1.4)                       27   8.2  
SB_32579| Best HMM Match : 7tm_1 (HMM E-Value=4e-15)                   27   8.2  
SB_36466| Best HMM Match : Tat (HMM E-Value=1.4)                       27   8.2  

>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1524

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 121 EAIAAEIGFFHPRLDKEVVIKSNAVFKVPEPN 216
           EA+ AEI    P++++EVV++S A     EP+
Sbjct: 523 EALKAEIDALKPKIEEEVVVQSAAPVAAGEPD 554


>SB_30187| Best HMM Match : ShlB (HMM E-Value=8.7)
          Length = 538

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 168 GGSHQVERSLQGPGTKSIYSRIISQPMSLSLGADRVSK 281
           GGSH    S  G   K+IY+ I S    ++ G + + K
Sbjct: 281 GGSHDYRNSFNGVSLKTIYTIIYSPTKRIAFGLEALGK 318


>SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1520

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -2

Query: 222 ISIWFRDLEDCVRLDDYLLIKSWVEESDFGCNSFLIPIIGDVDEVSN 82
           +S W R++ D    D+   ++ WV+++  G  S++   I DVDE+ +
Sbjct: 50  LSCWRRNIADVTVDDERTKLREWVDKTKKG--SWISRWISDVDEIES 94


>SB_14508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1392

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = +2

Query: 254  LSRR*SRLQTVVRCFTNQIRFLGPNTICKGYRLRRNS-----GRAKQGEDPAGQVEVQ 412
            L R   R+   + C+TN++R +   T+ +G R  R S      +AK  EDP G+   +
Sbjct: 1287 LLRNLMRVPLTIHCYTNEVRSIA--TVLEGCRKGRASFDRLFDQAKNLEDPDGECSAE 1342


>SB_8738| Best HMM Match : UPF0233 (HMM E-Value=4.3)
          Length = 475

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 20/78 (25%), Positives = 33/78 (42%)
 Frame = -1

Query: 532 LFRDQMTDIESLRSASSVVNSKYWKSFARAWTLTSLPSRSLNLNLACWVFALLCTSTVPS 353
           L   ++T   ++     +VNS    + A  W    L + +L    A WV  +L  ST+  
Sbjct: 378 LVNSRLTGTSAMWEDDMMVNSTLTGTSA-LWEDDILVNSTLTGTSALWVDDILVNSTLKG 436

Query: 352 KSITFTNGVWAKKTNLVG 299
            S  + N +    TN+ G
Sbjct: 437 TSALWENDILVNSTNIWG 454


>SB_40133| Best HMM Match : Tat (HMM E-Value=1.4)
          Length = 160

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 326 NTICKGYRLRRNSGRAKQGEDPAGQVEVQ 412
           N IC   R RR S +AK+  D   QVE +
Sbjct: 97  NAICSRRRRRRTSAKAKRKIDTQSQVEFE 125


>SB_32579| Best HMM Match : 7tm_1 (HMM E-Value=4e-15)
          Length = 357

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 448 WRKTSSISSSQQKRQTASSLCRSFGPGKE 534
           W K   IS+  Q  + A+S  RS  PGKE
Sbjct: 298 WSKKGEISAPIQGLEAATSRSRSITPGKE 326


>SB_36466| Best HMM Match : Tat (HMM E-Value=1.4)
          Length = 102

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 326 NTICKGYRLRRNSGRAKQGEDPAGQVEVQ 412
           N IC   R RR S +AK+  D   QVE +
Sbjct: 39  NAICSRRRRRRTSAKAKRKIDTQSQVEFE 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,915,879
Number of Sequences: 59808
Number of extensions: 372901
Number of successful extensions: 975
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)