Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0037
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41556-9|AAK39192.1|  692|Caenorhabditis elegans Potassium chann...    31   0.77 
U41556-8|AAM51518.1|  740|Caenorhabditis elegans Potassium chann...    31   0.77 
AY572974-1|AAT77227.1|  692|Caenorhabditis elegans KQT-1 potassi...    31   0.77 
Z81120-7|CAB03343.2|  274|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z66523-2|CAA91410.1|  451|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z92831-1|CAB07367.1|  332|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U23449-1|AAC24298.3|  488|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z96100-7|CAB09531.1|  824|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z79698-2|CAB01976.1|  824|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z79698-1|CAL44963.1|  758|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kina...    27   9.5  
AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascul...    27   9.5  
AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched relat...    27   9.5  

>U41556-9|AAK39192.1|  692|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 1, isoform a protein.
          Length = 692

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 357 GTVDVQSKAKTQQAKLRF---KLLEGKEVSVQALAKDFQYFEFTTEEADRKLSMSV 515
           G VD+QS+ KT QAKL F   K +E  E  +    +     E T  + D+KL + V
Sbjct: 543 GHVDLQSRVKTVQAKLDFICGKNIEKIEPKISMFTR-IATLETTVGKMDKKLDLMV 597


>U41556-8|AAM51518.1|  740|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 1, isoform b protein.
          Length = 740

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 357 GTVDVQSKAKTQQAKLRF---KLLEGKEVSVQALAKDFQYFEFTTEEADRKLSMSV 515
           G VD+QS+ KT QAKL F   K +E  E  +    +     E T  + D+KL + V
Sbjct: 591 GHVDLQSRVKTVQAKLDFICGKNIEKIEPKISMFTR-IATLETTVGKMDKKLDLMV 645


>AY572974-1|AAT77227.1|  692|Caenorhabditis elegans KQT-1 potassium
           channel protein.
          Length = 692

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = +3

Query: 357 GTVDVQSKAKTQQAKLRF---KLLEGKEVSVQALAKDFQYFEFTTEEADRKLSMSV 515
           G VD+QS+ KT QAKL F   K +E  E  +    +     E T  + D+KL + V
Sbjct: 543 GHVDLQSRVKTVQAKLDFICGKNIEKIEPKISMFTR-IATLETTVGKMDKKLDLMV 597


>Z81120-7|CAB03343.2|  274|Caenorhabditis elegans Hypothetical
           protein T12D8.3 protein.
          Length = 274

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -1

Query: 445 AWTLTSLPSRSLNLNLACWVFALLCTSTVPSKSITFTNGVWAKKTNLVG 299
           +W   S  SRS  +   C + A L TS  P       +G+W K  + +G
Sbjct: 85  SWLANSQMSRSRAMEAYCELMAQLDTSWDPDAETVKKSGLWEKMPSTMG 133


>Z66523-2|CAA91410.1|  451|Caenorhabditis elegans Hypothetical
           protein M05D6.2 protein.
          Length = 451

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 22/70 (31%), Positives = 37/70 (52%)
 Frame = +1

Query: 73  KTSVRYLINISNNRNQEAIAAEIGFFHPRLDKEVVIKSNAVFKVPEPNRYILESSVSLCH 252
           KT   +LI I+NN ++E I +++     +  KE V  S  +        +  ESS S+ +
Sbjct: 293 KTLKDHLIVITNNTDEERIKSDLEKIGEQCVKEAVDTSKKL-----NIEWNTESSTSIRN 347

Query: 253 SLSALIASPN 282
            ++ALI+S N
Sbjct: 348 QINALISSDN 357


>Z92831-1|CAB07367.1|  332|Caenorhabditis elegans Hypothetical
           protein F22G12.3 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 19/85 (22%), Positives = 35/85 (41%)
 Frame = -1

Query: 541 IYSLFRDQMTDIESLRSASSVVNSKYWKSFARAWTLTSLPSRSLNLNLACWVFALLCTST 362
           I  +    MT  ++ +   S++N+K WK         S P   L  N   W+ +      
Sbjct: 32  IVEVIETSMTSSKARKKVKSLINAKLWKEIDICPGFDSNPIIQLVRNYDVWIISFGIKRY 91

Query: 361 VPSKSITFTNGVWAKKTNLVGETSN 287
            P  +++  N     +TNL  +T++
Sbjct: 92  YPD-TLSCMNYYRLLQTNLEDKTAD 115


>U23449-1|AAC24298.3|  488|Caenorhabditis elegans Hypothetical
           protein K06A1.3 protein.
          Length = 488

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 178 IKSNAVFKVPEPNRYILESSVSLCHSLSALIASPNC 285
           + SNA F  P+ N   +   +S+C +LS     P C
Sbjct: 231 VNSNA-FNFPDQNNVRISCKISVCPTLSGTCHQPKC 265


>Z96100-7|CAB09531.1|  824|Caenorhabditis elegans Hypothetical
           protein H15N14.2a protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 330 PFVKVIDLEGTVDVQSKAKTQQAKLRFKLLEGKEVSV 440
           PFVKVI  E TV     AK    K  F+  +  ++SV
Sbjct: 640 PFVKVISPEDTVGFSESAKCMALKKAFEDAKRSKLSV 676


>Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical
           protein C34F6.9 protein.
          Length = 1181

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -1

Query: 544 YIYSLFRDQMTDIESLRS--ASSVVNSKYWKSFARAWTLTSLPS 419
           Y  S   + +T+  +L++  AS +VN +Y K+   +  L+S+PS
Sbjct: 61  YFTSRLSEVLTETHNLKAEEASKIVNGQYTKATPSSQFLSSIPS 104


>Z79698-2|CAB01976.1|  824|Caenorhabditis elegans Hypothetical
           protein H15N14.2a protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 330 PFVKVIDLEGTVDVQSKAKTQQAKLRFKLLEGKEVSV 440
           PFVKVI  E TV     AK    K  F+  +  ++SV
Sbjct: 640 PFVKVISPEDTVGFSESAKCMALKKAFEDAKRSKLSV 676


>Z79698-1|CAL44963.1|  758|Caenorhabditis elegans Hypothetical
           protein H15N14.2b protein.
          Length = 758

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 330 PFVKVIDLEGTVDVQSKAKTQQAKLRFKLLEGKEVSV 440
           PFVKVI  E TV     AK    K  F+  +  ++SV
Sbjct: 574 PFVKVISPEDTVGFSESAKCMALKKAFEDAKRSKLSV 610


>AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kinase
           receptor T17A3.1 protein.
          Length = 1083

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +1

Query: 19  YIFSGEACLDLDKKKQGHKTSVRYLINISNNRNQEAIAAEIGFFHPRLDKEVVIKSNAVF 198
           ++ + E+   LD        S +YL++I+     E I  E+       D +++I+  A F
Sbjct: 415 FLENSESMEVLDITDLSCNKSGKYLLSINYQDTSETIFWEVAVESDYPDVQLIIREPASF 474

Query: 199 KVPEPNRYILESSVSL-CHSLS 261
           KV     Y+L + +++ C S S
Sbjct: 475 KVFGHQFYLLGTHLNIDCVSTS 496


>AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 1
           protein.
          Length = 1083

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +1

Query: 19  YIFSGEACLDLDKKKQGHKTSVRYLINISNNRNQEAIAAEIGFFHPRLDKEVVIKSNAVF 198
           ++ + E+   LD        S +YL++I+     E I  E+       D +++I+  A F
Sbjct: 415 FLENSESMEVLDITDLSCNKSGKYLLSINYQDTSETIFWEVAVESDYPDVQLIIREPASF 474

Query: 199 KVPEPNRYILESSVSL-CHSLS 261
           KV     Y+L + +++ C S S
Sbjct: 475 KVFGHQFYLLGTHLNIDCVSTS 496


>AC006618-3|AAK68251.3|  960|Caenorhabditis elegans Patched related
           family protein 4 protein.
          Length = 960

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -3

Query: 221 YRFGSGTLKTAFDLMTTSLSSLGWKNPISAAIAS 120
           YR+     KTA + +  +L+S+GW  P++ A+ S
Sbjct: 860 YRYHRSEYKTAQEKVADTLASVGW--PVTQAVCS 891


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,162,242
Number of Sequences: 27780
Number of extensions: 269200
Number of successful extensions: 754
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)