Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0037
         (574 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03550.1 68416.m00357 zinc finger (C3HC4-type RING finger) fa...    29   2.9  
At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putat...    28   3.8  
At4g15070.1 68417.m02315 DC1 domain-containing protein contains ...    28   5.1  
At3g50570.1 68416.m05531 hydroxyproline-rich glycoprotein family...    27   8.9  
At1g73100.1 68414.m08452 SET domain-containing protein (SUVH3) i...    27   8.9  

>At3g03550.1 68416.m00357 zinc finger (C3HC4-type RING finger)
           family protein contains zinc finger domain, C3HC4 type
           (RING finger) 152633.
          Length = 356

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +1

Query: 169 EVVIKSNAVFKVPEPNRYILESSVSLCHS----LSALIASPNCC*MFHQPNSFSWPKHH 333
           E +IKS  V+K  + + ++  S  S+C S      +L   P C   FH P   +W K H
Sbjct: 136 ESLIKSITVYKYRKMDGFVESSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSH 194


>At4g28810.1 68417.m04119 expressed protein PMID: 12679534, putative
           bHLH127 transcription factor
          Length = 880

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -1

Query: 526 RDQMTDIESLRSASSVVNSKYWKSFARAWTL-TSLPSRSLNL--NLACWVFALLC 371
           +DQ  D  S R+ SS+     WK F  +W +  +L S  L L   +  +   LLC
Sbjct: 392 KDQREDENSARTPSSLQKDSSWKGFKVSWKINANLISHVLELITEILIYESMLLC 446


>At4g15070.1 68417.m02315 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 889

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +3

Query: 216 SIYSRIISQPMSLSLGADRVSKLLLDVSPTKFVFLAQTPFVKV 344
           S+ +++ISQP++LSL    + +++  VS   F    +T FV +
Sbjct: 188 SLITQLISQPITLSLKIYLIPQIISMVSKMDFDLQPETEFVSL 230


>At3g50570.1 68416.m05531 hydroxyproline-rich glycoprotein family
           protein contains proline-rich protein domains,
           INTERPRO:IPR000694
          Length = 189

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 388 VFALLCTSTVPSKSITFTNGVWAKKTNLVGETSN 287
           + ALLC  ++P+ ++  T   W K ++L    +N
Sbjct: 7   IVALLCLVSLPNPTVGSTKKPWPKPSDLANHNNN 40


>At1g73100.1 68414.m08452 SET domain-containing protein (SUVH3)
           identical to SUVH3 [Arabidopsis thaliana] GI:13517747;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH3 (SUVH3) GI:14625477
          Length = 669

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -2

Query: 174 YLLIKSWVEESDFGCNSFLIPII 106
           Y + +SWVE+   GCN+F   ++
Sbjct: 332 YSISESWVEKGKSGCNTFKYKLV 354


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,727,195
Number of Sequences: 28952
Number of extensions: 263445
Number of successful extensions: 835
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)