Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0036
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 87 3e-18
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 87 3e-18
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 87 3e-18
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 55 9e-09
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 41 1e-04
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 36 0.006
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 36 0.006
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 35 0.008
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 31 0.10
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 30 0.23
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.71
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 6.6
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 6.6
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 25 8.8
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 25 8.8
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 86.6 bits (205), Expect = 3e-18
Identities = 38/41 (92%), Positives = 40/41 (97%)
Frame = +3
Query: 84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQ 206
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIE+
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 41
Score = 29.1 bits (62), Expect = 0.54
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 205 KFEKEAQANG*RILQICWVLDKLK 276
KFEKEA G + WVLDKLK
Sbjct: 41 KFEKEATELGKGSFKYAWVLDKLK 64
Score = 26.2 bits (55), Expect = 3.8
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +2
Query: 227 QMGKGSFKYVGYWTN*RAERXASRITIRYXLLWKXRKLASNYVTI 361
++GKGSFKY +AER ITI LWK N I
Sbjct: 48 ELGKGSFKYAWVLDKLKAERERG-ITID-IALWKFETPKYNVTVI 90
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 86.6 bits (205), Expect = 3e-18
Identities = 38/41 (92%), Positives = 40/41 (97%)
Frame = +3
Query: 84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQ 206
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIE+
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 41
Score = 29.1 bits (62), Expect = 0.54
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 205 KFEKEAQANG*RILQICWVLDKLK 276
KFEKEA G + WVLDKLK
Sbjct: 41 KFEKEATELGKGSFKYAWVLDKLK 64
Score = 26.2 bits (55), Expect = 3.8
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +2
Query: 227 QMGKGSFKYVGYWTN*RAERXASRITIRYXLLWKXRKLASNYVTI 361
++GKGSFKY +AER ITI LWK N I
Sbjct: 48 ELGKGSFKYAWVLDKLKAERERG-ITID-IALWKFETPKYNVTVI 90
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 86.6 bits (205), Expect = 3e-18
Identities = 38/41 (92%), Positives = 40/41 (97%)
Frame = +3
Query: 84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQ 206
MGKEK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIE+
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 41
Score = 29.1 bits (62), Expect = 0.54
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = +1
Query: 205 KFEKEAQANG*RILQICWVLDKLK 276
KFEKEA G + WVLDKLK
Sbjct: 41 KFEKEATELGKGSFKYAWVLDKLK 64
Score = 26.2 bits (55), Expect = 3.8
Identities = 18/45 (40%), Positives = 21/45 (46%)
Frame = +2
Query: 227 QMGKGSFKYVGYWTN*RAERXASRITIRYXLLWKXRKLASNYVTI 361
++GKGSFKY +AER ITI LWK N I
Sbjct: 48 ELGKGSFKYAWVLDKLKAERERG-ITID-IALWKFETPKYNVTVI 90
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 54.8 bits (126), Expect = 9e-09
Identities = 24/50 (48%), Positives = 35/50 (70%), Gaps = 4/50 (8%)
Frame = +3
Query: 96 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQV----REGGPGKW 233
K H+NIV IGHVD+GKST G++++ G +DKRT+E++ +E G W
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESW 285
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 41.1 bits (92), Expect = 1e-04
Identities = 16/38 (42%), Positives = 29/38 (76%)
Frame = +3
Query: 96 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQV 209
K +++VV GHVDSGKST G ++++ G I+ R+++++
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKL 212
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.006
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 179
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 35.5 bits (78), Expect = 0.006
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 179
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 35.1 bits (77), Expect = 0.008
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = +3
Query: 90 KEKTHINIVVIGHVDSGKSTTTGHLIYKC 176
++K H+NI IGHVD GK+T T I KC
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTA-AITKC 76
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 31.5 bits (68), Expect = 0.10
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +3
Query: 147 TTTGHLIYKCGGIDKRTIEQVREGGPGKWVKDPSNMLGIGQTKGLSVXRRVSQFDIXXSG 326
+ G +++ GID++TI+ REGG +WV + + ++V D+ SG
Sbjct: 255 SANGDMVFS-SGIDRKTIQYSREGGKREWVSNSFRRFHSHDVRCMAVF-ECKSLDVLISG 312
Query: 327 SXE 335
+
Sbjct: 313 GMD 315
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 30.3 bits (65), Expect = 0.23
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 108 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQVR 212
NI + H+DSGK+T T ++Y G I + I +VR
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI--KDIHEVR 93
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 28.7 bits (61), Expect = 0.71
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 108 NIVVIGHVDSGKSTTTGHLIYKCG 179
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 280 SPLVCPIPNIFEGSFTHLPGPPSRTCSMVRLSIPP 176
+P + P+ + F G+ + P SRT S+ L PP
Sbjct: 877 APSMAPVRSPFPGASSAQPAAMSRTSSVSTLPPPP 911
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 108 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQVR 212
N ++ HVD GK+T L+ G I + VR
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVR 55
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +3
Query: 78 PKMGKEKTHINIVVIGHVDSGKST 149
P + + INI IGHV GKST
Sbjct: 15 PAIISRQATINIGTIGHVAHGKST 38
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 25.0 bits (52), Expect = 8.8
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -1
Query: 224 WASFSNLLDGTFVNTTTFVD 165
W SFS +L +NT +D
Sbjct: 729 WLSFSEILSSVLINTKNLID 748
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,097
Number of Sequences: 5004
Number of extensions: 45758
Number of successful extensions: 148
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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