Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0036
         (617 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                84   8e-17
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.32 
SB_32032| Best HMM Match : PAN (HMM E-Value=0.029)                     31   0.99 
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 29   2.3  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.0  

>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 38/41 (92%), Positives = 39/41 (95%)
 Frame = +3

Query: 84  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQ 206
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIE+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 41


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +3

Query: 84  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 179
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43


>SB_32032| Best HMM Match : PAN (HMM E-Value=0.029)
          Length = 610

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 374 SWDTEISFKETWIHRETFFRAGLAAVASFVAGXVNPVEISERLGY 508
           +W   +   + W  R+ F+R G+ A+ S++ G         R+GY
Sbjct: 308 TWYHVVYTYDYWTGRQRFYRDGVMAIESYIGGIDIATNFKVRMGY 352


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 99  THINIVVIGHVDSGKSTTTGHLIY 170
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/44 (47%), Positives = 23/44 (52%)
 Frame = +2

Query: 230 MGKGSFKYVGYWTN*RAERXASRITIRYXLLWKXRKLASNYVTI 361
           MGKGSFKY       +AER    ITI    LWK   L   YVT+
Sbjct: 1   MGKGSFKYAWVLDKLKAERERG-ITID-IALWKFETL-KYYVTV 41


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 108  NIVVIGHVDSGKSTTTGHLIYKCGGIDK 191
            N  ++ HVD GKST    L+   G I K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISK 1970


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,069,688
Number of Sequences: 59808
Number of extensions: 352658
Number of successful extensions: 741
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)