Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0036
(617 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 88 5e-18
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 88 5e-18
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 88 5e-18
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 88 5e-18
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 88 5e-18
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 54 8e-08
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 48 4e-06
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 48 4e-06
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 35 0.054
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 35 0.054
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.071
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.16
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 33 0.16
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 33 0.16
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 33 0.16
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.22
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.22
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat... 31 0.87
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 30 1.5
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 30 1.5
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p... 30 1.5
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr... 30 1.5
X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein. 30 1.5
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 30 1.5
AC006772-1|AAF60610.3| 326|Caenorhabditis elegans Hypothetical ... 29 2.7
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z69904-10|CAA93782.2| 754|Caenorhabditis elegans Hypothetical p... 29 3.5
Z69902-13|CAA93770.2| 754|Caenorhabditis elegans Hypothetical p... 29 3.5
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 29 3.5
AF024501-11|AAB70366.2| 443|Caenorhabditis elegans Hypothetical... 29 3.5
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 29 3.5
AF036705-4|AAO91726.1| 316|Caenorhabditis elegans Hypothetical ... 28 6.1
AF036705-3|AAB95171.1| 556|Caenorhabditis elegans Hypothetical ... 28 6.1
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 87.8 bits (208), Expect = 5e-18
Identities = 39/41 (95%), Positives = 40/41 (97%)
Frame = +3
Query: 84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQ 206
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIE+
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 41
Score = 35.1 bits (77), Expect = 0.040
Identities = 24/65 (36%), Positives = 30/65 (46%)
Frame = +1
Query: 205 KFEKEAQANG*RILQICWVLDKLKG*AXSVAYHNSILXXLEVXKTSK*LCYHSLDGFLGH 384
KFEKEAQ G + WVLDKLK I + + K Y ++ GH
Sbjct: 41 KFEKEAQEMGKGSFKYAWVLDKLK-----AERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 385 RDFIQ 399
RDFI+
Sbjct: 96 RDFIK 100
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 87.8 bits (208), Expect = 5e-18
Identities = 39/41 (95%), Positives = 40/41 (97%)
Frame = +3
Query: 84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQ 206
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIE+
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 41
Score = 31.9 bits (69), Expect = 0.38
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +1
Query: 205 KFEKEAQANG*RILQICWVLDKLK 276
KFEKEAQ G + WVLDKLK
Sbjct: 41 KFEKEAQEMGKGSFKYAWVLDKLK 64
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 87.8 bits (208), Expect = 5e-18
Identities = 39/41 (95%), Positives = 40/41 (97%)
Frame = +3
Query: 84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQ 206
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIE+
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 41
Score = 35.1 bits (77), Expect = 0.040
Identities = 24/65 (36%), Positives = 30/65 (46%)
Frame = +1
Query: 205 KFEKEAQANG*RILQICWVLDKLKG*AXSVAYHNSILXXLEVXKTSK*LCYHSLDGFLGH 384
KFEKEAQ G + WVLDKLK I + + K Y ++ GH
Sbjct: 41 KFEKEAQEMGKGSFKYAWVLDKLK-----AERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 385 RDFIQ 399
RDFI+
Sbjct: 96 RDFIK 100
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 87.8 bits (208), Expect = 5e-18
Identities = 39/41 (95%), Positives = 40/41 (97%)
Frame = +3
Query: 84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQ 206
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIE+
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 41
Score = 35.1 bits (77), Expect = 0.040
Identities = 24/65 (36%), Positives = 30/65 (46%)
Frame = +1
Query: 205 KFEKEAQANG*RILQICWVLDKLKG*AXSVAYHNSILXXLEVXKTSK*LCYHSLDGFLGH 384
KFEKEAQ G + WVLDKLK I + + K Y ++ GH
Sbjct: 41 KFEKEAQEMGKGSFKYAWVLDKLK-----AERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 385 RDFIQ 399
RDFI+
Sbjct: 96 RDFIK 100
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 87.8 bits (208), Expect = 5e-18
Identities = 39/41 (95%), Positives = 40/41 (97%)
Frame = +3
Query: 84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQ 206
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIE+
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 41
Score = 35.1 bits (77), Expect = 0.040
Identities = 24/65 (36%), Positives = 30/65 (46%)
Frame = +1
Query: 205 KFEKEAQANG*RILQICWVLDKLKG*AXSVAYHNSILXXLEVXKTSK*LCYHSLDGFLGH 384
KFEKEAQ G + WVLDKLK I + + K Y ++ GH
Sbjct: 41 KFEKEAQEMGKGSFKYAWVLDKLK-----AERERGITIDIALWKFETAKYYITIIDAPGH 95
Query: 385 RDFIQ 399
RDFI+
Sbjct: 96 RDFIK 100
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 54.0 bits (124), Expect = 8e-08
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 4/53 (7%)
Frame = +3
Query: 87 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIE----QVREGGPGKW 233
G K HIN+V +GHVD+GKST G L++ G +DKRT+E + +E G W
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESW 156
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 48.4 bits (110), Expect = 4e-06
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = +3
Query: 93 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQVR 212
+K IN++V+GHVD+GKST GHL++ +D RTI++ +
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFK 206
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 48.4 bits (110), Expect = 4e-06
Identities = 19/40 (47%), Positives = 30/40 (75%)
Frame = +3
Query: 93 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQVR 212
+K IN++V+GHVD+GKST GHL++ +D RTI++ +
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFK 224
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 34.7 bits (76), Expect = 0.054
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +3
Query: 39 GSVYYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 170
GS++ ++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 120 GSLFTEVWIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 34.7 bits (76), Expect = 0.054
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +3
Query: 39 GSVYYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 170
GS++ ++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 120 GSLFTEVWIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.071
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 108 NIVVIGHVDSGKSTTTGHLIYKCGGI 185
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 108 NIVVIGHVDSGKSTTTGHLIYKCGGID 188
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 90 KEKTHINIVVIGHVDSGKSTTT 155
++K H+N+ IGHVD GK+T T
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLT 66
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 90 KEKTHINIVVIGHVDSGKSTTT 155
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 33.1 bits (72), Expect = 0.16
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 90 KEKTHINIVVIGHVDSGKSTTT 155
++K H+N+ IGHVD GK+T T
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLT 67
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 179
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.22
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 179
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
see also lmb-protein 1 protein.
Length = 1067
Score = 30.7 bits (66), Expect = 0.87
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +2
Query: 413 HRETFFRAGLAAVASFVAGXVNP-VEISERLGYLLKGNGSKNPV 541
H +TF G A VNP VE+S++ +++ +G+++PV
Sbjct: 605 HEQTFTGEGFAQAVEGTIITVNPIVEVSQKYNVIIRHDGARDPV 648
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 108 NIVVIGHVDSGKSTTTGHLIYKCGGI 185
N ++ HVD GKST L+ CG +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAV 69
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 78 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEQVREGGPGKW 233
PK +EK I + +V+ G TTG +CGG ++ R + ++ +G KW
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKW 1352
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 78 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEQVREGGPGKW 233
PK +EK I + +V+ G TTG +CGG ++ R + ++ +G KW
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKW 1352
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/78 (30%), Positives = 33/78 (42%)
Frame = +3
Query: 15 QWHPPGLXGSVYYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKR 194
+W PP G TQ+VI K G++ V SG T L K G +
Sbjct: 1776 EWEPPKSDGGAPITQYVIEKKGKHGRDWQECGKV------SGDQTNAEILGLKEGEEYQF 1829
Query: 195 TIEQVREGGPGKWVKDPS 248
++ V + GPG+ DPS
Sbjct: 1830 RVKAVNKAGPGE-ASDPS 1846
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/78 (30%), Positives = 33/78 (42%)
Frame = +3
Query: 15 QWHPPGLXGSVYYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKR 194
+W PP G TQ+VI K G++ V SG T L K G +
Sbjct: 2305 EWEPPKSDGGAPITQYVIEKKGKHGRDWQECGKV------SGDQTNAEILGLKEGEEYQF 2358
Query: 195 TIEQVREGGPGKWVKDPS 248
++ V + GPG+ DPS
Sbjct: 2359 RVKAVNKAGPGE-ASDPS 2375
>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
protein ZK617.1a protein.
Length = 6839
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/78 (30%), Positives = 33/78 (42%)
Frame = +3
Query: 15 QWHPPGLXGSVYYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKR 194
+W PP G TQ+VI K G++ V SG T L K G +
Sbjct: 1986 EWEPPKSDGGAPITQYVIEKKGKHGRDWQECGKV------SGDQTNAEILGLKEGEEYQF 2039
Query: 195 TIEQVREGGPGKWVKDPS 248
++ V + GPG+ DPS
Sbjct: 2040 RVKAVNKAGPGE-ASDPS 2056
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical protein
ZK617.1c protein.
Length = 6629
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/78 (30%), Positives = 33/78 (42%)
Frame = +3
Query: 15 QWHPPGLXGSVYYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKR 194
+W PP G TQ+VI K G++ V SG T L K G +
Sbjct: 1776 EWEPPKSDGGAPITQYVIEKKGKHGRDWQECGKV------SGDQTNAEILGLKEGEEYQF 1829
Query: 195 TIEQVREGGPGKWVKDPS 248
++ V + GPG+ DPS
Sbjct: 1830 RVKAVNKAGPGE-ASDPS 1846
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical protein
ZK617.1b protein.
Length = 7158
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/78 (30%), Positives = 33/78 (42%)
Frame = +3
Query: 15 QWHPPGLXGSVYYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKR 194
+W PP G TQ+VI K G++ V SG T L K G +
Sbjct: 2305 EWEPPKSDGGAPITQYVIEKKGKHGRDWQECGKV------SGDQTNAEILGLKEGEEYQF 2358
Query: 195 TIEQVREGGPGKWVKDPS 248
++ V + GPG+ DPS
Sbjct: 2359 RVKAVNKAGPGE-ASDPS 2375
>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical protein
ZK617.1a protein.
Length = 6839
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/78 (30%), Positives = 33/78 (42%)
Frame = +3
Query: 15 QWHPPGLXGSVYYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKR 194
+W PP G TQ+VI K G++ V SG T L K G +
Sbjct: 1986 EWEPPKSDGGAPITQYVIEKKGKHGRDWQECGKV------SGDQTNAEILGLKEGEEYQF 2039
Query: 195 TIEQVREGGPGKWVKDPS 248
++ V + GPG+ DPS
Sbjct: 2040 RVKAVNKAGPGE-ASDPS 2056
>X15423-1|CAA33463.1| 6048|Caenorhabditis elegans twitchin protein.
Length = 6048
Score = 29.9 bits (64), Expect = 1.5
Identities = 24/78 (30%), Positives = 33/78 (42%)
Frame = +3
Query: 15 QWHPPGLXGSVYYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKR 194
+W PP G TQ+VI K G++ V SG T L K G +
Sbjct: 1195 EWEPPKSDGGAPITQYVIEKKGKHGRDWQECGKV------SGDQTNAEILGLKEGEEYQF 1248
Query: 195 TIEQVREGGPGKWVKDPS 248
++ V + GPG+ DPS
Sbjct: 1249 RVKAVNKAGPGE-ASDPS 1265
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = +3
Query: 78 PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGG--IDKRTIEQVREGGPGKW 233
PK +EK I + +V+ G TTG +CGG ++ R + ++ +G KW
Sbjct: 1299 PKGFEEKLEKVITTLSNVEMGLDDTTGIDGSECGGALMEVRALVRMLDGAQEKW 1352
>AC006772-1|AAF60610.3| 326|Caenorhabditis elegans Hypothetical
protein Y46D2A.2 protein.
Length = 326
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 313 ISNCDTRRXTLSPLVCPIPNIFEGSFTHL 227
+SNCD + L + PIPN+ EG+ +L
Sbjct: 15 LSNCDPQILRLKSIPSPIPNVEEGAKLYL 43
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 105 INIVVIGHVDSGKSTTT 155
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +3
Query: 105 INIVVIGHVDSGKSTTT 155
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z69904-10|CAA93782.2| 754|Caenorhabditis elegans Hypothetical
protein ZK20.6 protein.
Length = 754
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 335 KLASNYVTIHWMASWDTEISFKETWIHRETFFR 433
++ +NY+ + W SW EI K + +E F+
Sbjct: 368 RIVTNYILLRWAGSWSQEIGKKYEDLQQEFAFQ 400
>Z69902-13|CAA93770.2| 754|Caenorhabditis elegans Hypothetical
protein ZK20.6 protein.
Length = 754
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 335 KLASNYVTIHWMASWDTEISFKETWIHRETFFR 433
++ +NY+ + W SW EI K + +E F+
Sbjct: 368 RIVTNYILLRWAGSWSQEIGKKYEDLQQEFAFQ 400
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 96 KTHINIVVIGHVDSGKSTTT 155
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AF024501-11|AAB70366.2| 443|Caenorhabditis elegans Hypothetical
protein F39E9.1 protein.
Length = 443
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 313 ISNCDTRRXTLSPLVCPIPNIFEGSFTHL 227
+SNCD + L + PIPN+ EG+ +L
Sbjct: 119 LSNCDPQIIRLKNIPSPIPNVEEGAKLYL 147
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 96 KTHINIVVIGHVDSGKSTTT 155
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AF036705-4|AAO91726.1| 316|Caenorhabditis elegans Hypothetical
protein F37C4.5b protein.
Length = 316
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 236 YPFAWASFSNLLDGTFVNTTTFVDQMTS 153
YP S LDG FVN T F D + S
Sbjct: 156 YPLVAGQASIFLDGAFVNKTEFEDAVVS 183
>AF036705-3|AAB95171.1| 556|Caenorhabditis elegans Hypothetical
protein F37C4.5a protein.
Length = 556
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -1
Query: 236 YPFAWASFSNLLDGTFVNTTTFVDQMTS 153
YP S LDG FVN T F D + S
Sbjct: 396 YPLVAGQASIFLDGAFVNKTEFEDAVVS 423
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,325,800
Number of Sequences: 27780
Number of extensions: 254109
Number of successful extensions: 657
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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