Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0036
(617 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 81 6e-16
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 81 6e-16
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 81 6e-16
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 81 6e-16
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 47 9e-06
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 40 0.002
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 36 0.022
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 34 0.087
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 34 0.087
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 33 0.20
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 31 0.61
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 30 1.1
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 30 1.1
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 29 3.3
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 28 5.7
At1g13400.1 68414.m01562 zinc finger (C2H2 type) family protein ... 27 7.5
At3g13140.1 68416.m01644 hydroxyproline-rich glycoprotein family... 27 10.0
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 81.0 bits (191), Expect = 6e-16
Identities = 37/41 (90%), Positives = 38/41 (92%)
Frame = +3
Query: 84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQ 206
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIER 41
Score = 31.5 bits (68), Expect = 0.46
Identities = 22/65 (33%), Positives = 29/65 (44%)
Frame = +1
Query: 205 KFEKEAQANG*RILQICWVLDKLKG*AXSVAYHNSILXXLEVXKTSK*LCYHSLDGFLGH 384
+FEKEA R + WVLDKLK I + + K Y ++ GH
Sbjct: 41 RFEKEAAEMNKRSFKYAWVLDKLK-----AERERGITIDIALWKFETTKYYCTVIDAPGH 95
Query: 385 RDFIQ 399
RDFI+
Sbjct: 96 RDFIK 100
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 81.0 bits (191), Expect = 6e-16
Identities = 37/41 (90%), Positives = 38/41 (92%)
Frame = +3
Query: 84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQ 206
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIER 41
Score = 31.5 bits (68), Expect = 0.46
Identities = 22/65 (33%), Positives = 29/65 (44%)
Frame = +1
Query: 205 KFEKEAQANG*RILQICWVLDKLKG*AXSVAYHNSILXXLEVXKTSK*LCYHSLDGFLGH 384
+FEKEA R + WVLDKLK I + + K Y ++ GH
Sbjct: 41 RFEKEAAEMNKRSFKYAWVLDKLK-----AERERGITIDIALWKFETTKYYCTVIDAPGH 95
Query: 385 RDFIQ 399
RDFI+
Sbjct: 96 RDFIK 100
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 81.0 bits (191), Expect = 6e-16
Identities = 37/41 (90%), Positives = 38/41 (92%)
Frame = +3
Query: 84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQ 206
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIER 41
Score = 31.5 bits (68), Expect = 0.46
Identities = 22/65 (33%), Positives = 29/65 (44%)
Frame = +1
Query: 205 KFEKEAQANG*RILQICWVLDKLKG*AXSVAYHNSILXXLEVXKTSK*LCYHSLDGFLGH 384
+FEKEA R + WVLDKLK I + + K Y ++ GH
Sbjct: 41 RFEKEAAEMNKRSFKYAWVLDKLK-----AERERGITIDIALWKFETTKYYCTVIDAPGH 95
Query: 385 RDFIQ 399
RDFI+
Sbjct: 96 RDFIK 100
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 81.0 bits (191), Expect = 6e-16
Identities = 37/41 (90%), Positives = 38/41 (92%)
Frame = +3
Query: 84 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQ 206
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIER 41
Score = 31.5 bits (68), Expect = 0.46
Identities = 22/65 (33%), Positives = 29/65 (44%)
Frame = +1
Query: 205 KFEKEAQANG*RILQICWVLDKLKG*AXSVAYHNSILXXLEVXKTSK*LCYHSLDGFLGH 384
+FEKEA R + WVLDKLK I + + K Y ++ GH
Sbjct: 41 RFEKEAAEMNKRSFKYAWVLDKLK-----AERERGITIDIALWKFETTKYYCTVIDAPGH 95
Query: 385 RDFIQ 399
RDFI+
Sbjct: 96 RDFIK 100
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 47.2 bits (107), Expect = 9e-06
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = +3
Query: 93 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQVREGGPGK 230
+K H+N+V IGHVD+GKST G +++ G +D R I++ + K
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDK 143
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/36 (38%), Positives = 26/36 (72%)
Frame = +3
Query: 99 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQ 206
+ +N+ ++GHVDSGKST +G L++ G I ++ + +
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHK 273
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 35.9 bits (79), Expect = 0.022
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = +3
Query: 81 KMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQVRE 215
K ++K H+NI IGHVD GK+T T L I ++ E
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 33.9 bits (74), Expect = 0.087
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +3
Query: 33 LXGSVYYTQFVIRD*PKMGKEKTHINIVVIGHVDSGKSTTT 155
L S + T R + K H+N+ IGHVD GK+T T
Sbjct: 44 LSSSTFGTSSFWRSMATFTRNKPHVNVGTIGHVDHGKTTLT 84
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 33.9 bits (74), Expect = 0.087
Identities = 17/41 (41%), Positives = 26/41 (63%)
Frame = +3
Query: 96 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQVREG 218
K + NI ++ H+D+GK+TTT ++Y G K I +V EG
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTGRNYK--IGEVHEG 132
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 32.7 bits (71), Expect = 0.20
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 108 NIVVIGHVDSGKSTTTGHLIYKCGG 182
NI ++ HVD GK+T HLI GG
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG 35
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 31.1 bits (67), Expect = 0.61
Identities = 16/35 (45%), Positives = 19/35 (54%)
Frame = +3
Query: 108 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQVR 212
N+ VI HVD GKST T L+ G I + VR
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVR 55
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/60 (33%), Positives = 34/60 (56%)
Frame = +3
Query: 108 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQVREGGPGKWVKDPSNMLGIGQTKGLSV 287
NI + H+DSGK+T T +++ G I + I +VR G G K S + + + KG+++
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRIHE--IHEVR-GRDGVGAKMDS--MDLEREKGITI 121
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/60 (33%), Positives = 34/60 (56%)
Frame = +3
Query: 108 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQVREGGPGKWVKDPSNMLGIGQTKGLSV 287
NI + H+DSGK+T T +++ G I + I +VR G G K S + + + KG+++
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRIHE--IHEVR-GRDGVGAKMDS--MDLEREKGITI 121
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 108 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEQ 206
N +I H+D GKST L+ G + R +++
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDMKE 120
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = +3
Query: 72 D*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDK 191
D K EK N +I H+D GKST L+ G I K
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK 95
>At1g13400.1 68414.m01562 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 240
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -2
Query: 313 ISNCDTRRXTLSPLVCPIPNIFEGSFTHLPGPPSRTCSMVRLSIPPH 173
I N TR TL+ VC + + S+T + G P S V +PPH
Sbjct: 192 IGNNGTRHQTLTNSVCGGRALPDSSYTFI-GAPVANGSRVAPHLPPH 237
>At3g13140.1 68416.m01644 hydroxyproline-rich glycoprotein family
protein
Length = 183
Score = 27.1 bits (57), Expect = 10.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 265 PIPNIFEGSFTHLPGPPSRTCSMVRLSIPPH 173
P P+++ G++ H P P R R + PH
Sbjct: 114 PPPHVYGGNYAHPPSNPPRHSEAPRQATNPH 144
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,942,648
Number of Sequences: 28952
Number of extensions: 252994
Number of successful extensions: 631
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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