Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0034
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    29   0.63 
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        29   0.83 
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi...    26   4.4  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    26   5.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   7.8  

>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 12/51 (23%), Positives = 25/51 (49%)
 Frame = +1

Query: 280 SKGFPIIEKDVFAFRQPSNRIGVGSLYGLMVFCTSKLEVCYIEANGFYLGK 432
           + G P I+  +  ++ P   +     + +   C+  L VC+  A+G ++GK
Sbjct: 133 ASGIPTIKAILSGYKYPDMNV----FFSIKTLCSKSLAVCFSVASGLWVGK 179


>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = +1

Query: 220 KIRAEYHRIERNGQAILNGASKGFPIIEKDVFAFRQP-SNRIGVGSLYGLMVFCTSKLEV 396
           K + E   + RNG+ +L+ AS  F  + K V     P  N   +       +FCTS L  
Sbjct: 60  KSQEEMVSVSRNGKQLLSEAS--FFRLGKHVHLNFLPFENTFEMALRNDFQIFCTSILFT 117

Query: 397 CYIEA 411
           CYI++
Sbjct: 118 CYIQS 122


>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = -3

Query: 61  RSLDGTSSSGLMLRGL 14
           R LDG+S+SGLM+ GL
Sbjct: 67  RVLDGSSASGLMITGL 82


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 436 RGLLGDGNNEPYDDFRLPNGKICTWKASSVTRTV 537
           RG+L D +N   DDF L N +I         RT+
Sbjct: 38  RGILYDSDNRVVDDFFLNNKRIVLDSEIEFNRTI 71


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 3  LRAYRPRSINPLDEVPSKLRAVVV 74
          L +Y P+ INP +E+P   R + +
Sbjct: 13 LYSYEPQEINPGEEIPENEREISI 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,900
Number of Sequences: 5004
Number of extensions: 55974
Number of successful extensions: 162
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)