Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0034
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0468 - 18484386-18486377,18486741-18486827                       31   0.65 
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605...    30   1.5  
10_07_0120 + 13076748-13076955,13077060-13077370                       29   4.6  
01_06_0612 + 30602862-30603410                                         29   4.6  
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384...    28   8.0  

>07_03_0468 - 18484386-18486377,18486741-18486827
          Length = 692

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 651 LHNILRTITMFLSIPLI*HFCYXFGLIXRLH 559
           L N+ R+I  F S+P I H+ Y +G +  LH
Sbjct: 278 LVNMKRSIDSFASLPFIQHYLYFYGSLLNLH 308


>02_02_0007 +
           6056281-6057024,6057273-6057539,6057622-6057765,
           6057844-6058191,6058713-6059102
          Length = 630

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 86  HLHVRRSPPHLPRKLSLRIGARPXR*KLHAANPTSKR 196
           H H   +PPHL R+    + A P R  LH   PT  R
Sbjct: 20  HRHHPAAPPHLLRQRRGSVAATPLRLGLHLPTPTPLR 56


>10_07_0120 + 13076748-13076955,13077060-13077370
          Length = 172

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +1

Query: 505 TWKASSVTRTVWARSCPQVQXXDXAKXITKVLYQRNRQKHRN 630
           TWKASS ++TV ++   +V   D  + +T + Y+R  +  RN
Sbjct: 107 TWKASSGSKTVRSK---KVGGIDIGQKLTMMFYERRFEGDRN 145


>01_06_0612 + 30602862-30603410
          Length = 182

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
 Frame = -1

Query: 366 ETVQ*ANTDSVAWLTESEHILFDDRESFGSSVQNSL--SISFNSMILRSYLPK*EPWVFR 193
           +T+Q   T   +W   S  + FD + ++G+ +   +  +I  N  +L S L   EP+ F+
Sbjct: 98  QTIQDNTTRLTSWSLSSSFLAFDYQVNYGNFMHGLMKENIQLNRKVL-SELSMHEPYSFK 156

Query: 192 FEVGLAA*SFYRXGRAPIRSD 130
             V ++  S +   R P++ +
Sbjct: 157 ALVDVSR-SAFPGNRPPVKKE 176


>03_01_0510 +
           3841630-3844089,3844235-3844358,3844641-3844786,
           3844861-3844958,3845313-3845502
          Length = 1005

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 190 KTENPRLLFWKIRAEYHRIERNGQAILNGASKGFPIIEKDVFAFRQPSNR 339
           + E   LL + + +  H    +G  +++G +KGFP+    V  F+ PS++
Sbjct: 267 RREPQALLEYSVNSSEHGPSSHG-ILMSGQNKGFPVRMTKVDGFKLPSDQ 315


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,944,554
Number of Sequences: 37544
Number of extensions: 367635
Number of successful extensions: 890
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)