Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0034
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26224| Best HMM Match : VWD (HMM E-Value=0) 41 8e-04
SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 39 0.003
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.66
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 31 0.87
SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_27645| Best HMM Match : VWD (HMM E-Value=0.016) 29 2.7
SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07) 29 3.5
SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_39417| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 28 8.1
SB_34342| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
Length = 736
Score = 41.1 bits (92), Expect = 8e-04
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 81 QHIFTFDGRHLTFPGNCRYVLAHDXVDRNFTLLIQLQNGK 200
+H TFDGRH+ F G C Y LA D + + + +QN K
Sbjct: 222 RHYRTFDGRHIDFIGKCSYTLAQDCIPGSDQFSLHVQNDK 261
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 84 HIFTFDGRHLTFPGNCRYVL 143
H +FDG+ TF G C+Y+L
Sbjct: 576 HFVSFDGKAFTFGGKCQYLL 595
>SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 62
Score = 39.5 bits (88), Expect = 0.002
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +1
Query: 367 MVFCTSKLEVCYIEANGFYLGKLRGLLGDGNNEPYDDFRLPNGK 498
+V+ +++++V AN F +LRGL GD N E YD+F+ P G+
Sbjct: 6 VVYMSNRIQV---HANPFLQNRLRGLCGDMNGEQYDEFQSPTGE 46
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +3
Query: 15 RPRSINPLDEVPSKLRAVVVNGQHIFTFDGRHLTFPG----NCRYVLAHDXVDRNFTLLI 182
RPR+ P P A++ H+ TFD + FPG C YVLA D D FT++
Sbjct: 1632 RPRNWVP----PFNSTAMIFGKPHVSTFDSLYYRFPGYNKPECTYVLARDVRDNKFTIMS 1687
Query: 183 Q 185
Q
Sbjct: 1688 Q 1688
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 439 GLLGDGNNEPYDDFRLPNGK 498
GLLG NNE +D+ PNGK
Sbjct: 1811 GLLGTNNNEHHDEMTKPNGK 1830
>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1472
Score = 39.1 bits (87), Expect = 0.003
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 403 IEANGFYLGKLRGLLGDGNNEPYDDFRLPNGK 498
+ AN F +LRGL GD N E YD+F+ P G+
Sbjct: 1425 VHANPFLQNRLRGLCGDMNGEQYDEFQSPTGE 1456
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 31.5 bits (68), Expect = 0.66
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Frame = +3
Query: 42 EVPSKLRAVVVNGQHIFTFDGRHLTFPGNCRYVLAH-----DXVDRNFTLLIQLQNGKPK 206
+ P +V H TFD R + G C YVL+ + + FT+ I++ + +
Sbjct: 843 DTPCSGTCTMVGNSHFTTFDSRSYSMHGQCDYVLSEHCHFSNDTTKQFTIHIKISSDGSR 902
Query: 207 ALIL 218
LI+
Sbjct: 903 QLIV 906
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 31.1 bits (67), Expect = 0.87
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 84 HIFTFDGRHLTFPGNCRYVLAHD 152
H TFDGR +F G C YV++ D
Sbjct: 33 HYKTFDGRLYSFQGGCNYVMSTD 55
>SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +1
Query: 439 GLLGDGNNEPYDDFRLPNGK 498
GLLG NNE +D+ PNGK
Sbjct: 63 GLLGTNNNEHHDEMTKPNGK 82
>SB_27645| Best HMM Match : VWD (HMM E-Value=0.016)
Length = 237
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 388 LEVCYIEANGFYLGKLRGLLGDGNNEPYDDFRLPNGK 498
L V + FY G GL GD +N P +DF P G+
Sbjct: 187 LNVLFTPTAAFY-GNTGGLCGDMDNNPANDFTGPTGE 222
>SB_54863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1251
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +1
Query: 151 TXSIETSRC*SNFKTENPRLLFWKIRA-EYHR-IERN 255
T S S C N+ ENP L+ W++ A +YHR +RN
Sbjct: 913 TDSEYFSYCIRNYIHENPDLILWELAANDYHRYTDRN 949
>SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07)
Length = 1033
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 89 LHVRRSPPHLPRKLSLRIGARPXR*KLHAANP 184
L VR+ PP L RKL+ R+ P R L P
Sbjct: 978 LRVRKDPPPLKRKLAQRVAIPPKRIALGEVTP 1009
>SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 356
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 421 YLGKLRGLLGDGNNEPYDDFRLPNGK 498
Y G GL G+ N P DDF + NG+
Sbjct: 176 YRGNTCGLCGNFNGVPSDDFMMKNGR 201
>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3213
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = +3
Query: 186 LQNGKPKALILEDKSGVSSN*KKWTGYSERSFQRIPDHRKGCVRFPSTKQQNRCWLIVRS 365
L +G P A + +KS + G S R+ + H K RF Q WL R
Sbjct: 2575 LGSGNPSAEDIRNKSSHVRDTWDRLGASLRTRTQQLQHNKEIQRFKREADQLEAWLNARE 2634
Query: 366 HGLL 377
H LL
Sbjct: 2635 HDLL 2638
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +2
Query: 290 SRSSKRMCSLSVNQATESVLAHCTVSWSSAHLNLRCATLKL---TASTWVNFAVFSETVT 460
S S+ + ++S + ES + S S LN+ T T T AVF T+T
Sbjct: 584 SSSTVNVSAISTTPSIESTIMASVAS--SIQLNITSNTTMAVNDTLRTTSTSAVFPTTIT 641
Query: 461 TSLTMTSGYLMERSALG 511
S +TS L+ SA+G
Sbjct: 642 PSPNITSYILLMTSAVG 658
>SB_39417| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 246
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -1
Query: 525 YRTRFPSADLSIR*PEVIVRLVVTVSEKTAKFTQVEAVSFNVAHLKFRCAE 373
YRTR +A S + + T E AKF +V VSF A K+ A+
Sbjct: 19 YRTRKSAAKRSSVPSPIRAKTPSTSRENVAKFAEVRIVSFYSASKKYSIAK 69
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 27.9 bits (59), Expect = 8.1
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +2
Query: 290 SRSSKRMCSLSVNQATESVLAHCTVSWSSAHLNLRCATLKL---TASTWVNFAVFSETVT 460
S S+ + ++S + ES + S S LN+ T T T AVF T+T
Sbjct: 1187 SSSTVNVSAISTTSSIESTIMASVAS--SIQLNITSNTTMAVNDTLRTTSTSAVFPTTIT 1244
Query: 461 TSLTMTSGYLMERSALG 511
S +TS L+ SA+G
Sbjct: 1245 PSPNITSYPLLTTSAVG 1261
>SB_34342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 66 VVVNGQHIFTFDGRHLTFPGNCRYVLAHDXVDRNFTLLIQLQNGKPKALILEDK 227
+ ++ HIF DG H FP + V AH + T I+L L+LE +
Sbjct: 252 IAIHFSHIFAGDGFHFVFP-SLLQVYAHHQGNDMVTRAIELFASVAPILLLETR 304
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,100,221
Number of Sequences: 59808
Number of extensions: 430048
Number of successful extensions: 1089
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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