Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0034
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81583-7|CAB04668.1|  268|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AL117203-12|CAB60423.1|  487|Caenorhabditis elegans Hypothetical...    28   5.4  

>Z81583-7|CAB04668.1|  268|Caenorhabditis elegans Hypothetical
           protein T02G6.7 protein.
          Length = 268

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +3

Query: 30  NPLDEVPSKLRAVVVNG---QHIFTFDGRHLTFPGNCRYV 140
           +PLD  P K+ + ++N    ++  TFDG    F  NCR++
Sbjct: 77  DPLDLFPMKMESPLINFLDFKYNITFDGEIWNFKYNCRFI 116


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
            K03H1.5 protein.
          Length = 1385

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 439  GLLGDGNNEPYDDFRLPNGKI 501
            GLLG  NN+P DD   P+G +
Sbjct: 1036 GLLGTYNNDPADDLTTPSGTV 1056



 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +3

Query: 12  YRPRSINPLDEVPSKLRAVVVNGQHIFTFDGRHLTFPGNCRYVL 143
           Y  R  N   +  +     +    H+ T+DG   T PG   YVL
Sbjct: 837 YWRRMTNGCQDYRAPAAGYIYGEPHVITYDGIRYTMPGKGYYVL 880


>AL117203-12|CAB60423.1|  487|Caenorhabditis elegans Hypothetical
           protein Y48C3A.20 protein.
          Length = 487

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 19/92 (20%), Positives = 43/92 (46%)
 Frame = +3

Query: 15  RPRSINPLDEVPSKLRAVVVNGQHIFTFDGRHLTFPGNCRYVLAHDXVDRNFTLLIQLQN 194
           RP     L  VP K+R +    + + ++ G+  T   + + ++  +  + NF+ L  LQN
Sbjct: 88  RPDFNGTLASVPYKVRNIDGYLKKLGSYSGKRPTLSSDLQLMITFEQEESNFSDLQFLQN 147

Query: 195 GKPKALILEDKSGVSSN*KKWTGYSERSFQRI 290
             P    +  +   ++N +  +  S++  Q++
Sbjct: 148 QFPNDFRVGKRGRYNNNQEAPSSVSKQQLQQV 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,435,142
Number of Sequences: 27780
Number of extensions: 316541
Number of successful extensions: 866
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)