Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0034
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.68 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   6.3  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +2

Query: 272 TELPKDSRSSKRMCSLSVNQATESVLAHCTVSWSSAHLNLRCATLKLTASTWVNFAVFSE 451
           T L  DSRS++RM + SVN     +L    + W   H +     + L     +  +VF+ 
Sbjct: 272 TVLWLDSRSTERMIAASVNLICH-ILCMSDLHWQLPHNSTNPPNILLYYRDSLALSVFAL 330

Query: 452 TVTTSL 469
            +T  L
Sbjct: 331 ILTALL 336


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +2

Query: 386 NLRCATLKLTASTWVNFAVFSETVTTSLTMTSGYLMERSALG 511
           N+R A   L +S + NF  F   V   L    G  + + A G
Sbjct: 603 NVRFAVFALGSSAYPNFCAFGRYVDNLLGELGGERLLKLAQG 644


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +1

Query: 232 EYHRIERNGQAILNGASKGFPI 297
           E H  +R  ++IL  A KGF +
Sbjct: 336 ELHTEDRAAESILEPAKKGFKL 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,261
Number of Sequences: 438
Number of extensions: 4165
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)