Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0034
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37710.1 68417.m05338 VQ motif-containing protein contains PF...    29   2.2  
At5g14520.1 68418.m01702 pescadillo-related similar to pescadill...    29   2.9  
At5g13530.1 68418.m01562 protein kinase family protein / ankyrin...    27   8.8  

>At4g37710.1 68417.m05338 VQ motif-containing protein contains
           PF05678: VQ motif
          Length = 123

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -1

Query: 426 QVEAVSFNVAHLKFRCAEDHETVQ--*ANTDSVAWLTESEHILFDDRESFGS-SVQNSLS 256
           +VE V+F V   +   A +HETVQ     T   A    S    FD   S+G  S QN  +
Sbjct: 60  RVEPVNFKVLVQRLTGAPEHETVQAKPLKTSDDAAKQSSSSFAFDPSSSWGDFSFQNPAN 119

Query: 255 IS 250
           IS
Sbjct: 120 IS 121


>At5g14520.1 68418.m01702 pescadillo-related similar to pescadillo
           [Zebrafish, Danio rerio] SWISS-PROT:P79741
          Length = 590

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -2

Query: 212 KSLGFSVLKLD*QREV---SIDXVVRQYVATVSWEGEVATVEREDVLTVHN 69
           KSL F  LK    REV   S+  V+  +   VSWEGE A  + +D    H+
Sbjct: 334 KSL-FKDLKFFLSREVPRESLQLVITAFGGMVSWEGEGAPFKEDDESITHH 383


>At5g13530.1 68418.m01562 protein kinase family protein / ankyrin
           repeat family protein contains similarity to
           ankyrin-related gene UNC-44 gi|790608|gb|AAA85854;
           contains Pfam domains PF00023: Ankyrin repeat and
           PF00069: Protein kinase domain
          Length = 834

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 485 YLMERSALGKRVR*RVPSGPAAVHRCXRXXRPNX*QKCYIKGIDKNIV 628
           +++ +     R R R  SGP+  H C    +P+  ++  + G D N V
Sbjct: 562 HVLIKKGANVRSRLREGSGPSVAHVCSYHGQPDCMRELLVAGADPNAV 609


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,546,720
Number of Sequences: 28952
Number of extensions: 298237
Number of successful extensions: 768
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 768
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)