Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0033
         (563 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q29BI1 Cluster: GA20459-PA; n=1; Drosophila pseudoobscu...    34   2.6  
UniRef50_Q22ZC2 Cluster: Putative uncharacterized protein; n=1; ...    32   8.1  

>UniRef50_Q29BI1 Cluster: GA20459-PA; n=1; Drosophila
           pseudoobscura|Rep: GA20459-PA - Drosophila pseudoobscura
           (Fruit fly)
          Length = 134

 Score = 33.9 bits (74), Expect = 2.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 454 LPKKCSVGIKVITKFKKYASCCCS 383
           +PKKC +G+ V+ KF K A C C+
Sbjct: 85  IPKKCLIGLPVVAKFPKPAPCGCN 108


>UniRef50_Q22ZC2 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1146

 Score = 32.3 bits (70), Expect = 8.1
 Identities = 14/31 (45%), Positives = 23/31 (74%)
 Frame = -1

Query: 500 R*IFLLFVKTLTIKLTTQKMFCRNKSNYQVQ 408
           R I+ LF+K L IKL T K++ ++K+ YQ++
Sbjct: 2   RTIWYLFLKFLAIKLVTHKLWYKSKTKYQLK 32


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 437,085,206
Number of Sequences: 1657284
Number of extensions: 7365623
Number of successful extensions: 15430
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 15019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15428
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37904934977
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)