Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0033
         (563 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    25   0.34 
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.6  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.6  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.6  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   9.6  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 430 FRQNIFWVVSLMVNVFTNNKNIYL 501
           F+  I  ++SL++N F +NK I+L
Sbjct: 15  FQAEIAQLMSLIINTFYSNKEIFL 38


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 420 LPSSKNTHRVVVVPWSYIDTLFEL 349
           +P  KNT      P  Y+D  F +
Sbjct: 182 MPGKKNTIVYACCPEPYVDVTFTI 205


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 420 LPSSKNTHRVVVVPWSYIDTLFEL 349
           +P  KNT      P  Y+D  F +
Sbjct: 182 MPGKKNTIVYACCPEPYVDVTFTI 205


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 420 LPSSKNTHRVVVVPWSYIDTLFEL 349
           +P  KNT      P  Y+D  F +
Sbjct: 182 MPGKKNTIVYACCPEPYVDVTFTI 205


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 420 LPSSKNTHRVVVVPWSYIDTLFEL 349
           +P  KNT      P  Y+D  F +
Sbjct: 182 MPGKKNTIVYACCPEPYVDVTFTI 205


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = -3

Query: 420 LPSSKNTHRVVVVPWSYIDTLFEL 349
           +P  KNT      P  Y+D  F +
Sbjct: 182 MPGKKNTIVYACCPEPYVDVTFTI 205


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,852
Number of Sequences: 336
Number of extensions: 2224
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13890653
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)