Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0033
         (563 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59105.1 68418.m07405 expressed protein                             30   1.2  
At5g06040.1 68418.m00669 self-incompatibility protein-related          28   5.0  
At5g53610.1 68418.m06660 glycosyl hydrolase family protein 17 si...    27   8.7  

>At5g59105.1 68418.m07405 expressed protein
          Length = 132

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 305 YPRVVL*VSIEEFVNNSNSVSIYDQGTTTTRC 400
           +P  VL ++ E+F NNSNS+ +  +G     C
Sbjct: 7   HPLAVLVLTTEKFANNSNSIRVNAEGIEAALC 38


>At5g06040.1 68418.m00669 self-incompatibility protein-related 
          Length = 111

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 156 LTNTKIINLDQFSLSHYQLCSVICSLICYLIVAI 55
           + N+ IINL+ +  S + +  V+ SLIC L + I
Sbjct: 1   MINSSIINLNSYVCSIFIMSIVVISLICSLALQI 34


>At5g53610.1 68418.m06660 glycosyl hydrolase family protein 17
           similar to glucan endo-1,3-beta-glucosidase precursor
           SP:P52409 from [Triticum aestivum]
          Length = 110

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/47 (40%), Positives = 20/47 (42%)
 Frame = +2

Query: 296 FCSYPRVVL*VSIEEFVNNSNSVSIYDQGTTTTRCVFFELGNYFYSD 436
           FC YP  +L      FV NS   S   QG T   C F   G   YSD
Sbjct: 61  FCYYPNTLL--DHASFVMNSYYKS---QGRTYAACSFGNTGYLIYSD 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,490,937
Number of Sequences: 28952
Number of extensions: 159503
Number of successful extensions: 320
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)