Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0032
         (342 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_05_0006 - 20030673-20030895,20031432-20031478,20031597-200316...    27   5.1  
09_06_0357 + 22502660-22502876,22503433-22504577                       26   6.7  
09_04_0117 + 14813472-14814113,14814194-14814404,14814552-148148...    26   6.7  
03_05_1114 - 30500518-30500913,30501312-30501372,30501455-305015...    26   6.7  

>09_05_0006 -
           20030673-20030895,20031432-20031478,20031597-20031665,
           20032590-20032725,20032900-20033067,20034286-20034354,
           20034535-20034631,20034742-20034820,20035702-20035872
          Length = 352

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 2/60 (3%)
 Frame = -1

Query: 324 TTSRARPRS*--AGWSPRGATASRTHLDLDREIERDLADRFDAALRCDCFDTALPASDPL 151
           T+SR  P S   AG  P G  A   HL   R   R + D  DA L     D A     PL
Sbjct: 21  TSSRGLPASARRAGRRPAGERALAAHLGRPRLQRRRVGDGHDAGLELRVEDGAQGLERPL 80


>09_06_0357 + 22502660-22502876,22503433-22504577
          Length = 453

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 294 AGWSPRGATASRTHLDLDREIERDLADRFDAALRCDCFDTALPASDP 154
           A W P  ATA+   +   R++++  A  F      D    ALP S P
Sbjct: 397 ACWGPGSATAATGRVSYARQLDQRQAAPFMDVSYIDANQWALPPSTP 443


>09_04_0117 +
           14813472-14814113,14814194-14814404,14814552-14814846,
           14815059-14815448,14815528-14815605,14815692-14815926
          Length = 616

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 46  KEISLHS*ISKYYLNGSNAFVLSSNVGFG 132
           K +  +S ++KY L G    ++  N GFG
Sbjct: 444 KHVKAYSSVNKYLLTGRYRNIMDMNAGFG 472


>03_05_1114 -
           30500518-30500913,30501312-30501372,30501455-30501558,
           30501680-30501739,30502419-30502599,30502873-30503037,
           30503395-30503531
          Length = 367

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 154 WVRGRQCCIKTITSQRCIESV 216
           W     CCI+TITS++ + +V
Sbjct: 90  WKTDSWCCIRTITSEKRVSAV 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,201,544
Number of Sequences: 37544
Number of extensions: 120129
Number of successful extensions: 217
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)