Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0032
         (342 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.99 
SB_57584| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  

>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 29.1 bits (62), Expect = 0.99
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 318 SRARPRS*AGWSPRGATASRTHLDLDREIERD 223
           SR+R +   G  PR     R H D DR+ ERD
Sbjct: 183 SRSREKDREGEKPRDRDRDRRHRDRDRDKERD 214


>SB_57584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 298

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +1

Query: 88  NGSNAFVLSSNVGFGR**LFXEWVR 162
           NGS+ FV S NVG+G    F E+VR
Sbjct: 66  NGSSVFVRSPNVGYG----FLEFVR 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,534,125
Number of Sequences: 59808
Number of extensions: 144652
Number of successful extensions: 190
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 498218920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)