Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0032
         (342 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical ...    27   3.5  
Z49131-6|CAA88979.1|  297|Caenorhabditis elegans Hypothetical pr...    26   8.1  

>AF045641-1|AAK68386.1|  970|Caenorhabditis elegans Hypothetical
           protein F53H1.1 protein.
          Length = 970

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 318 SRARPRS*AGWSPRGATASRTHLDLDREIER 226
           S+ R RS    SPRG+   R H D DR+ ER
Sbjct: 16  SKERKRS-RSRSPRGSREHREHRDRDRDRER 45


>Z49131-6|CAA88979.1|  297|Caenorhabditis elegans Hypothetical
           protein ZC373.7 protein.
          Length = 297

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -3

Query: 268 GFQNAPGP*SRDRTRSCRPIRCSAA 194
           G   APGP  +D T +  PI C  A
Sbjct: 118 GTPGAPGPKGQDSTTTFAPINCPTA 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,197,804
Number of Sequences: 27780
Number of extensions: 105278
Number of successful extensions: 233
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)