Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0032
         (342 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   2.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   2.4  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   9.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   9.5  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 174 LYQNNHIAALHRIGRQDRVLSLDQ 245
           L Q+N +  +HR+ R +RV  +D+
Sbjct: 363 LPQSNKMNRMHRMNRVNRVNRMDR 386


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 2.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -2

Query: 221  LPTDSMQRCDVIVLIQHCLPRT 156
            +PTD    CD  +++ H   +T
Sbjct: 1479 VPTDKKSACDSKLIVDHSSQKT 1500


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 57  TYFFKTNTQQTSRNLVPNS 1
           TY+ K NTQQ ++  +P S
Sbjct: 385 TYYSKHNTQQFTQ-YIPES 402


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +1

Query: 37  VRFKEISLHS*ISKYYLNGSNAFVLS 114
           VRF+ +   + I  ++ NGSN    S
Sbjct: 391 VRFRNLVKGTKIDNWWDNGSNQIAFS 416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,825
Number of Sequences: 438
Number of extensions: 1665
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)