Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0031
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    28   1.2  
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    27   2.1  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   2.1  
SPCC1322.14c |vtc4||vacuolar transporter chaperone |Schizosaccha...    26   4.8  
SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|c...    25   8.4  

>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +3

Query: 171 KHRMSSSVPLTLEELSKIRKDFYAEPKNNWLRMFVLDMIHSK 296
           KHR      +T++ +SK++K+F     N WL   +   ++S+
Sbjct: 567 KHRDFKRTLITMKAISKLQKNFDVRIWNYWLVALIQQKLYSR 608


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 614 PPSLTGSLSKKFTTLPSSFSPFLAVSTMLFN 522
           P  L  SLS +F++LP SF P  A    LFN
Sbjct: 177 PTLLYKSLSNEFSSLPFSFMPAKANVNDLFN 207


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +1

Query: 541 TAKKGEKLDGRVVNFLLKDPVNDGGQWDMLVNLVNK 648
           T+K+G ++   +VN L+   +  GG  DM+  L+ K
Sbjct: 772 TSKRGREVTKELVNSLVNRHLQSGGNIDMVSQLLRK 807


>SPCC1322.14c |vtc4||vacuolar transporter chaperone
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 213 LSKIRKDFYAEPKNNWLRMFV-LDMIHSK*PSTDGRQILHFMFSTLRLRLK 362
           LS IR+D  +   NNW RM + +D    + P  D   I+ F ++ L ++L+
Sbjct: 378 LSLIREDGPSRAGNNWRRMDIGIDYPFDQLPDED---IVRFPYAILEVKLQ 425


>SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 300 PSTDGRQILHFMFSTLRLRLKGNLSPIKRAPVDAGCLQHST 422
           P  +G  I  F+F T RL L        + P+D     HS+
Sbjct: 82  PRIEGLTIYKFIFKTARLLLSSTYGSSAKRPIDIIHQLHSS 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,562
Number of Sequences: 5004
Number of extensions: 59163
Number of successful extensions: 183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)