Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0030
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 27 3.2
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 3.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.2
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 4.2
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 26 4.2
SPAC21E11.07 ||SPAC2C4.01|glycine cleavage T-protein|Schizosacch... 26 5.6
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 7.4
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 7.4
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 7.4
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 7.4
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 7.4
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 7.4
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 25 9.7
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 25 9.7
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 25 9.7
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +2
Query: 311 PASGQRRCRSGESPPEPLGRSRTLRQDSDEAHDDGRKESTAPDRSY 448
P+ ++ R+G S R RT+R DEA +ES + D SY
Sbjct: 85 PSKHRKGTRNGSS----FSRHRTIRDLDDEAESVTSEESESDDSSY 126
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 230 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 99
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = +2
Query: 368 RSRTLRQDSDEAHDDGRKESTAPDRSYRSGEGKEQIPERHRE 493
R+ + ++HD G S + DR + K++ +HRE
Sbjct: 710 RTERKKDTQKQSHDHGHSHSKSHDREKEKEKKKDREHRKHRE 751
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 237 GLLSGNVFSRRKHNLFIGVDVTETAGVEAFELTLQ 133
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 26.2 bits (55), Expect = 4.2
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = +3
Query: 231 EDPEVFIRGIEKFDSSQLK---HTETQEKNPLPDKDVVAAEKAHQN-LLDGVEHFDKTQM 398
ED E ++G E + SSQ + + ET K P P+ + + + +N + ++ D M
Sbjct: 159 EDLETTLKGDENYSSSQKEIYDNDETIPKPPSPEVEKIETSTSVENAYITNSQYNDTLDM 218
Query: 399 KHTTTE 416
+ T++
Sbjct: 219 EDQTSD 224
>SPAC21E11.07 ||SPAC2C4.01|glycine cleavage
T-protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 325
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 547 HKGRH*AREISLNHYFITVTRKCI-SLVSPYFNIDVSQI 660
HKG + +E+++ Y+ VTRK I + P + + SQ+
Sbjct: 215 HKGCYLGQELTVRTYYTGVTRKRIFPFIIPNYEDNPSQV 253
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 239 WVFSVATSSADGSTIFSLVSTSRRQL 162
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 239 WVFSVATSSADGSTIFSLVSTSRRQL 162
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 7.4
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +1
Query: 46 SSSKIY*FRMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 225
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 226 TEKTQKSL 249
+KS+
Sbjct: 82 NITNKKSV 89
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 239 WVFSVATSSADGSTIFSLVSTSRRQL 162
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 7.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 239 WVFSVATSSADGSTIFSLVSTSRRQL 162
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 7.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 242 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 144
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 437 DRSYRSGEGKEQIPERHRELR 499
D S R G +IP+RHR+ R
Sbjct: 2 DLSSRLSSGSSRIPKRHRDYR 22
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 25.0 bits (52), Expect = 9.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1
Query: 161 VLKPSS*LFRSVATLGRSFREGVSLTEQAILNQYIFDDEGDRRFVHSATSCR 6
V+ S ++R+ AT G E ++L + Y D +RRF A+ CR
Sbjct: 828 VMAKLSSIYRNEATTGNV--ESMALVIDGVSLTYALDFSLERRFFELASLCR 877
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 249 IRGIEKFDSSQLKHTETQEKNPLPD 323
+ G + DSS +K T +E PLP+
Sbjct: 7 LHGPKPMDSSHIKVTNVKELKPLPE 31
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,308
Number of Sequences: 5004
Number of extensions: 47681
Number of successful extensions: 212
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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