Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0029
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    44   2e-05
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    26   3.7  
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    26   4.8  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   6.4  
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ...    25   8.5  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   8.5  
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    25   8.5  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 44.0 bits (99), Expect = 2e-05
 Identities = 21/47 (44%), Positives = 32/47 (68%)
 Frame = +3

Query: 114 YHQPNRNMATXKAISIRLKSVKNIQKIXQSMKMVSAAKYTRAERDLK 254
           +H  +   AT K I  RLKS+KNI+KI +++K V+  K TRA+R ++
Sbjct: 24  FHASSPCEATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAME 70



 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 251 ETARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRXLCG 373
           E +  Y   + + ++ A    PE+  K L VA +SD+ LCG
Sbjct: 70  EASNKYYRVSDEVFKEAGTKAPEEG-KTLMVACSSDKGLCG 109



 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 376 VHTGVSKVIRNRLGEPGA-ENIKVICVGDKSRGILQR 483
           +H+ +S++IR  L +P   EN  +  +G+K R  L R
Sbjct: 111 IHSSISRLIRRELHDPKTFENTSLCILGEKVRTQLLR 147


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = -1

Query: 274 FTIGTSSFRSRSARVYLAADTIFMDCXIFWIFFTDL 167
           F + + SF     RVYL +  +  +  ++W FFT++
Sbjct: 224 FFLNSLSFLKIPFRVYLDSHDLTPNLGLWWYFFTEM 259


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +3

Query: 189 KIXQSMKMVSAAKYTRAERDLKLLVPMVKVQYSSMKGLRLHLLKMTPSNCLL 344
           ++ QS  +    KYT   +  KL V M +       GL  HLL++ P+ C+L
Sbjct: 299 RLRQSPSINGTPKYTGLIQCFKL-VWMEQGIVGLYGGLTAHLLRVVPNACIL 349


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 168  KSVKNIQKIXQSMKMVSAAKYTRAERDLK 254
            + VKN+Q    S+K +SAA +TR    +K
Sbjct: 958  QQVKNMQLELASLKQISAAFFTRIPLKIK 986


>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +1

Query: 448 CVGDKSRGILQRLYGKHIISVLMRSDVSHLL 540
           C  ++ + ++QR YG H  S+++ S+  + L
Sbjct: 221 CWSEEMQLLIQRTYGDHYFSLVLASETIYSL 251


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 507 CANEIGRLPPTFLDASQLATAILTS 581
           C NEI +   T LDAS L  A++ S
Sbjct: 78  CCNEISQSSSTELDASVLFEAVIMS 102


>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +3

Query: 54  ICKMLGRFGPGVGTQVVAVVYHQPNRNMATXKAISIRLKSVKNIQKIXQSMKMVSAAKY 230
           +   LG F   VG    A V   P  N+A  +   +R K+V ++ K+   +      +Y
Sbjct: 69  LADQLGNFVDYVGGPEYAHVLLSPLENLAATEETVVRDKAVDSLNKVCICLSQEQLEQY 127


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,015
Number of Sequences: 5004
Number of extensions: 55087
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)