Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0029
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821...    38   0.008
07_03_0571 - 19602755-19603831                                         35   0.057
07_03_1146 + 24343283-24344029                                         31   0.70 
02_01_0116 + 862401-862734,862823-863078,863177-863311,863395-86...    28   6.6  
12_01_0427 + 3359766-3360092,3360425-3360541,3360738-3360893,336...    27   8.7  
04_01_0260 - 3506672-3508981                                           27   8.7  
04_01_0254 + 3388215-3388553,3388869-3390830                           27   8.7  
03_04_0141 - 17648728-17649471                                         27   8.7  

>10_05_0025 +
           8215685-8215716,8215859-8215937,8216340-8216412,
           8216712-8216864,8217456-8217569,8217649-8217776,
           8219004-8219099,8219479-8219601,8219694-8219810,
           8219983-8220104,8220439-8220508
          Length = 368

 Score = 37.5 bits (83), Expect = 0.008
 Identities = 16/27 (59%), Positives = 24/27 (88%)
 Frame = +3

Query: 147 KAISIRLKSVKNIQKIXQSMKMVSAAK 227
           +A+  R+KSV+NIQKI ++MKMV+A+K
Sbjct: 60  RALRTRMKSVRNIQKITKAMKMVAASK 86


>07_03_0571 - 19602755-19603831
          Length = 358

 Score = 34.7 bits (76), Expect = 0.057
 Identities = 15/27 (55%), Positives = 22/27 (81%)
 Frame = +3

Query: 162 RLKSVKNIQKIXQSMKMVSAAKYTRAE 242
           R+ SV+N QKI ++MK+V+AAK  RA+
Sbjct: 44  RIDSVRNTQKITEAMKLVAAAKVRRAQ 70


>07_03_1146 + 24343283-24344029
          Length = 248

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 388 HQCVHSAQX-SVRGHSNKQLLGVIFRRCNLSP 296
           H+C+HSA    ++GH ++  L ++FR  N +P
Sbjct: 8   HRCMHSASCVCIKGHLSEDALFLVFRHMNWNP 39


>02_01_0116 +
           862401-862734,862823-863078,863177-863311,863395-864721
          Length = 683

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 247 SRSARVYLAADTIFMDCXIFWIFFTDLRRMEMAXKVAIFLFG 122
           S  A +YLAA  +F  C  +    TD+       K+A+F FG
Sbjct: 407 SHVALIYLAAP-VFAFCNAYGFGVTDMNLASTYCKIAMFAFG 447


>12_01_0427 +
           3359766-3360092,3360425-3360541,3360738-3360893,
           3361009-3361144,3361303-3361436,3361832-3361987,
           3362496-3362594,3362817-3362932,3363358-3363532,
           3363807-3363885,3363989-3364132,3364206-3364319,
           3364415-3364536,3364929-3365011,3365091-3365188,
           3365300-3365420,3366237-3366333,3366782-3366874,
           3366948-3367053,3367395-3367540,3367617-3367697,
           3367838-3367921,3367997-3368132,3368334-3368400,
           3368943-3369102
          Length = 1048

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 499 CAFRTIFAGYREIYLPHRSP*CSQHQV 419
           C FRT  + Y  + L H+   C  HQV
Sbjct: 790 CVFRTPLSNYDAVVLLHQEKLCRPHQV 816


>04_01_0260 - 3506672-3508981
          Length = 769

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 67  WDASDRVSAPKSWRWFTISQTGIWLLXRPFPSVLNL*KISRKSHSP*RW 213
           W  S     P+SW    +  +G W + R F   LNL +    S++P R+
Sbjct: 331 WTYSYLNDRPRSWLHHALLCSGKWRMLRRFILSLNLFRFLVNSNNPTRY 379


>04_01_0254 + 3388215-3388553,3388869-3390830
          Length = 766

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +1

Query: 67  WDASDRVSAPKSWRWFTISQTGIWLLXRPFPSVLNL*KISRKSHSP*RWCQLLNT 231
           W  S     P+SW    +  +G W + R F   LNL +    +  P R+   L T
Sbjct: 326 WTYSYLNDRPRSWLHHALLCSGKWRMLRRFILSLNLFRFLANNKKPTRYRMWLGT 380


>03_04_0141 - 17648728-17649471
          Length = 247

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = -1

Query: 388 HQCVHSAQX-SVRGHSNKQLLGVIFRRCNLSP 296
           ++C HSA    ++GH ++  L ++FR  N +P
Sbjct: 8   YRCTHSASCLCLKGHISEDALFLVFRHMNWNP 39


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,565,589
Number of Sequences: 37544
Number of extensions: 407504
Number of successful extensions: 1016
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)