Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0029
(601 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.) 59 3e-09
SB_52422| Best HMM Match : Nop17p (HMM E-Value=6.5e-13) 31 0.71
SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14) 28 6.6
SB_433| Best HMM Match : DUF883 (HMM E-Value=0.75) 28 6.6
SB_46248| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05) 28 6.6
SB_5783| Best HMM Match : PIR (HMM E-Value=6.1) 28 6.6
SB_36623| Best HMM Match : NACHT (HMM E-Value=0.26) 27 8.8
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12) 27 8.8
SB_11352| Best HMM Match : LRR_1 (HMM E-Value=0.0019) 27 8.8
>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 328
Score = 58.8 bits (136), Expect = 3e-09
Identities = 52/157 (33%), Positives = 79/157 (50%), Gaps = 8/157 (5%)
Frame = +3
Query: 153 ISIRLKSVKNIQKIXQSMKMVSAAKYTRAERDLK--------LLVPMVKVQYSSMKGLRL 308
+S+RL+SVKNIQKI +SMKMVSAAK+ RAE++LK KV+
Sbjct: 62 VSLRLRSVKNIQKITKSMKMVSAAKFGRAEKELKSARAYGDGATALYDKVEIKQESEDPK 121
Query: 309 HLLKMTPSNCLLL*PLTXXCAECTHWCIQSDPQPSRRTWC*EHQGDLCGR*ISRYPAKIV 488
HL+ + S+ L + A+ I + PSR GD + +SR K +
Sbjct: 122 HLIVVLSSDRGLCGGIHSGLAKAVKASIAGN--PSRNVGIVSF-GDKTKQILSRTLGKNM 178
Query: 489 RKAHH*CANEIGRLPPTFLDASQLATAILTSGYEFGS 599
+ ++G+ PP F +A+ LA IL +G++F +
Sbjct: 179 LMSF----MDVGKKPPLFCEATFLAQEILDAGFDFNT 211
Score = 50.0 bits (114), Expect = 1e-06
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +2
Query: 251 ETARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRXLCG 373
++AR YG+GA Y++ E+ +DPK L V ++SDR LCG
Sbjct: 95 KSARAYGDGATALYDKVEIKQESEDPKHLIVVLSSDRGLCG 135
Score = 36.7 bits (81), Expect = 0.014
Identities = 13/47 (27%), Positives = 29/47 (61%)
Frame = +1
Query: 376 VHTGVSKVIRNRLGEPGAENIKVICVGDKSRGILQRLYGKHIISVLM 516
+H+G++K ++ + + N+ ++ GDK++ IL R GK+++ M
Sbjct: 137 IHSGLAKAVKASIAGNPSRNVGIVSFGDKTKQILSRTLGKNMLMSFM 183
>SB_52422| Best HMM Match : Nop17p (HMM E-Value=6.5e-13)
Length = 175
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -3
Query: 545 QESRWETSDLISTLMMCFP---YNLCRIPRDLSPTQITLMFSAPG 420
+ES TS LISTL P YN+ P D P I L S PG
Sbjct: 82 EESSKSTSQLISTLEPSIPQPMYNILTEPSDDKPEFIVLEISLPG 126
>SB_47085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 31.1 bits (67), Expect = 0.71
Identities = 20/45 (44%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -3
Query: 545 QESRWETSDLISTLMMCFP---YNLCRIPRDLSPTQITLMFSAPG 420
+ES TS LISTL P YN+ P D P I L S PG
Sbjct: 191 EESSKSTSQLISTLEPSIPQPMYNILTEPSDDKPEFIVLEISLPG 235
>SB_25063| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1203
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 207 KMVSAAKYTRAERDLKLLVPMVKVQYSSMKGLRLHLLKMTPSNCLL 344
K+VS T + +KL + + K Q ++M+G + L T SNC L
Sbjct: 214 KLVSDDDGTPYRKKMKLSLKVNKEQQNTMEGQKAGLNTQTESNCYL 259
>SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)
Length = 490
Score = 27.9 bits (59), Expect = 6.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +3
Query: 375 CTHWCIQSDPQPSR 416
C+ WCIQ PQP R
Sbjct: 324 CSKWCIQGIPQPER 337
>SB_433| Best HMM Match : DUF883 (HMM E-Value=0.75)
Length = 386
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = -1
Query: 433 SQHQVRRDGCGSLWIHQCVHSAQXSVRGHSNKQLLGVI---FRRCNLSPF--IELYCTFT 269
+QH++R G +++IH + +A S++ + Q+L I + N SP I+L T T
Sbjct: 295 TQHEIRMKGLEAIFIHCDLLNASSSLKQGAPSQILACIELDKGKINFSPHSPIQLSTTST 354
Query: 268 IGTSSFR 248
SS R
Sbjct: 355 DYVSSLR 361
>SB_46248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 305
Score = 27.9 bits (59), Expect = 6.6
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Frame = +3
Query: 132 NMATXKAISIRLKSVKNIQKIXQSMKMVSAAKYTRAERDLKLLVPMVK---VQYSSMKGL 302
N+AT +++S ++S + ++ + K AERD+KLL VK V++S+ +
Sbjct: 3 NIAT-RSVSSSMRSAISANNY-KNHALGKQLKTLEAERDMKLLSIQVKKDDVKFSTSPKM 60
Query: 303 RLHLLKMTPSN 335
++ LK P+N
Sbjct: 61 KVKKLKSLPAN 71
>SB_15138| Best HMM Match : CLN3 (HMM E-Value=4.4e-05)
Length = 662
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 9 YFFVDW*ILPINTHKICKMLGRFGPGVGTQVVAVVYHQPNRNMA 140
YFFV+ +LP+ K + F G G +V VY+ ++A
Sbjct: 113 YFFVEAGLLPLTAFYSEKTVFAFSGGTGFGLVGTVYYTGKHSLA 156
>SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)
Length = 215
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 62 NVGTLRTGCRHPSRGGGLP 118
N+ TL TG R P GGG+P
Sbjct: 26 NLNTLPTGARQPVPGGGVP 44
>SB_36623| Best HMM Match : NACHT (HMM E-Value=0.26)
Length = 420
Score = 27.5 bits (58), Expect = 8.8
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = +3
Query: 102 VAVVYHQPNRNMATXKAISIRLKSV-----KNIQKIXQSMKMVSAAKYTRAERDLKLLVP 266
V + +H+ RN I LK+ ++++ +++ + + + RD KL+
Sbjct: 178 VKIFFHKRTRNREAYGCSKIDLKTYMYKPFEDLKPENENVFKLLGEQAFKGIRDGKLIFE 237
Query: 267 MVKVQYSSMKGLRLHLLKMTPSNCLLL*PLTXXC 368
VK+ + + LH L PSN L+ P C
Sbjct: 238 SVKIDAALLNRGLLHSLPEIPSNSLVEPPKQHFC 271
>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
Length = 872
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 370 AQXSVRGHSNKQLLGV-IFRRCNLSPFIELYCTFTIGTSSFRS 245
A SV H +K+L V + N F L C+ T+GT FRS
Sbjct: 472 ASYSVLKHVDKKLFDVFVISPRNHFLFTPLLCSTTVGTLEFRS 514
>SB_11352| Best HMM Match : LRR_1 (HMM E-Value=0.0019)
Length = 507
Score = 27.5 bits (58), Expect = 8.8
Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = +3
Query: 102 VAVVYHQPNRNMATXKAISIRLKSV-----KNIQKIXQSMKMVSAAKYTRAERDLKLLVP 266
V + +H+ RN I LK+ ++++ +++ + + + RD KL+
Sbjct: 116 VKIFFHKRTRNREAYGCSKIDLKTYMYKPFEDLKPENENVFKLLGEQAFKGIRDGKLIFE 175
Query: 267 MVKVQYSSMKGLRLHLLKMTPSNCLLL*PLTXXC 368
VK+ + + LH L PSN L+ P C
Sbjct: 176 SVKIDAALLNRGLLHSLPEIPSNSLVEPPKQYFC 209
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,899,069
Number of Sequences: 59808
Number of extensions: 448979
Number of successful extensions: 1044
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1044
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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