Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0029
(601 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical ... 64 6e-11
AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical ... 64 6e-11
AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical ... 64 6e-11
Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical p... 29 2.5
Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical p... 29 2.5
AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical ... 29 2.5
AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector ... 29 2.5
Z75543-1|CAA99867.1| 314|Caenorhabditis elegans Hypothetical pr... 28 4.4
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 27 7.7
>AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18c protein.
Length = 200
Score = 64.5 bits (150), Expect = 6e-11
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = +3
Query: 129 RNMATXKAISIRLKSVKNIQKIXQSMKMVSAAKYTRAERDLK 254
R AT K ISIRLKSVKNIQKI +SMKMV+AAKY +AER+LK
Sbjct: 23 RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELK 64
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +1
Query: 376 VHTGVSKVIRNRLGEPGAENIKVICVGDKSRGILQRLYGKHII 504
VH+ + K +N L G + I+V+ +GDKSR LQRLY I+
Sbjct: 110 VHSSIVKEAKNILNNAGDKEIRVVAIGDKSRAGLQRLYANSIL 152
Score = 34.7 bits (76), Expect = 0.051
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +2
Query: 257 ARPYGEGAVQFYER----AEVTPPEDDPKQLFVAMTSDRXLCG 373
AR YG GA F++ E ++ KQ+ V +TSDR LCG
Sbjct: 66 ARAYGVGAKTFFDNIDPVVEGVEKQESKKQVLVLITSDRGLCG 108
Score = 32.3 bits (70), Expect = 0.27
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = +3
Query: 513 NEIGRLPPTFLDASQLATAIL 575
NEIGR PP+F DAS A AIL
Sbjct: 156 NEIGRAPPSFADASIAAKAIL 176
>AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18a protein.
Length = 299
Score = 64.5 bits (150), Expect = 6e-11
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = +3
Query: 129 RNMATXKAISIRLKSVKNIQKIXQSMKMVSAAKYTRAERDLK 254
R AT K ISIRLKSVKNIQKI +SMKMV+AAKY +AER+LK
Sbjct: 23 RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELK 64
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +1
Query: 376 VHTGVSKVIRNRLGEPGAENIKVICVGDKSRGILQRLYGKHII 504
VH+ + K +N L G + I+V+ +GDKSR LQRLY I+
Sbjct: 110 VHSSIVKEAKNILNNAGDKEIRVVAIGDKSRAGLQRLYANSIL 152
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = +3
Query: 513 NEIGRLPPTFLDASQLATAILTSGYEF 593
NEIGR PP+F DAS A AIL SGY+F
Sbjct: 156 NEIGRAPPSFADASIAAKAILDSGYDF 182
Score = 34.7 bits (76), Expect = 0.051
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +2
Query: 257 ARPYGEGAVQFYER----AEVTPPEDDPKQLFVAMTSDRXLCG 373
AR YG GA F++ E ++ KQ+ V +TSDR LCG
Sbjct: 66 ARAYGVGAKTFFDNIDPVVEGVEKQESKKQVLVLITSDRGLCG 108
>AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18b protein.
Length = 313
Score = 64.5 bits (150), Expect = 6e-11
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = +3
Query: 129 RNMATXKAISIRLKSVKNIQKIXQSMKMVSAAKYTRAERDLK 254
R AT K ISIRLKSVKNIQKI +SMKMV+AAKY +AER+LK
Sbjct: 23 RGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELK 64
Score = 43.2 bits (97), Expect = 1e-04
Identities = 19/43 (44%), Positives = 27/43 (62%)
Frame = +1
Query: 376 VHTGVSKVIRNRLGEPGAENIKVICVGDKSRGILQRLYGKHII 504
VH+ + K +N L G + I+V+ +GDKSR LQRLY I+
Sbjct: 110 VHSSIVKEAKNILNNAGDKEIRVVAIGDKSRAGLQRLYANSIL 152
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = +3
Query: 513 NEIGRLPPTFLDASQLATAILTSGYEF 593
NEIGR PP+F DAS A AIL SGY+F
Sbjct: 156 NEIGRAPPSFADASIAAKAILDSGYDF 182
Score = 34.7 bits (76), Expect = 0.051
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +2
Query: 257 ARPYGEGAVQFYER----AEVTPPEDDPKQLFVAMTSDRXLCG 373
AR YG GA F++ E ++ KQ+ V +TSDR LCG
Sbjct: 66 ARAYGVGAKTFFDNIDPVVEGVEKQESKKQVLVLITSDRGLCG 108
>Z70684-11|CAA94604.1| 1141|Caenorhabditis elegans Hypothetical
protein F28D1.10 protein.
Length = 1141
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 548 VQESRWETSDLISTLMMCFPYNLCR 474
V+++RW + D++ T CFPYNL R
Sbjct: 1108 VRKNRWLSMDVLET---CFPYNLVR 1129
>Z70682-10|CAA94588.1| 1141|Caenorhabditis elegans Hypothetical
protein F28D1.10 protein.
Length = 1141
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 548 VQESRWETSDLISTLMMCFPYNLCR 474
V+++RW + D++ T CFPYNL R
Sbjct: 1108 VRKNRWLSMDVLET---CFPYNLVR 1129
>AC024785-3|AAF60597.2| 456|Caenorhabditis elegans Hypothetical
protein Y46C8AL.2 protein.
Length = 456
Score = 29.1 bits (62), Expect = 2.5
Identities = 21/64 (32%), Positives = 25/64 (39%)
Frame = -3
Query: 575 ENGSGQLTCVQESRWETSDLISTLMMCFPYNLCRIPRDLSPTQITLMFSAPGSPRRLRIT 396
+NG C +SRW T ST M P I +PT T M S P +P
Sbjct: 135 DNGKNYFVCSYDSRWATKPTPST-MKSTPTTPTTIKS--TPTTPTTMKSTPTTPTTPTTM 191
Query: 395 LDTP 384
TP
Sbjct: 192 KSTP 195
>AB073210-1|BAB70473.1| 1141|Caenorhabditis elegans rac effector
protein.
Length = 1141
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -3
Query: 548 VQESRWETSDLISTLMMCFPYNLCR 474
V+++RW + D++ T CFPYNL R
Sbjct: 1108 VRKNRWLSMDVLET---CFPYNLVR 1129
>Z75543-1|CAA99867.1| 314|Caenorhabditis elegans Hypothetical
protein K01D12.1 protein.
Length = 314
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 84 PVRSVPTFCKFYGCLSVKFTSRRKN 10
PV PTF FY C+ K S R N
Sbjct: 52 PVEGTPTFKAFYNCVYPKLASLRGN 76
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 334 LLGVIFRRCNLSPFIELYCT-FTIGTSSFRSRSARVYLAAD 215
LLGV F CN FI + T FT+ SF R+ V+ D
Sbjct: 288 LLGVFFHTCN---FISVLATSFTVYVQSFHFRNQHVHERMD 325
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,233,008
Number of Sequences: 27780
Number of extensions: 326936
Number of successful extensions: 744
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 743
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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