Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0027
(801 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 281 1e-76
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 159 4e-40
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 157 2e-39
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 122 6e-29
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 70 3e-13
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 67 3e-12
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 66 7e-12
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 51 2e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 42 1e-04
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 31 0.14
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 2.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 4.1
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual 27 4.1
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 25 9.5
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 9.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 281 bits (688), Expect = 1e-76
Identities = 137/181 (75%), Positives = 146/181 (80%), Gaps = 2/181 (1%)
Frame = +3
Query: 255 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 434
GMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LL
Sbjct: 46 GMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLL 105
Query: 435 TEAPLQPQGQQREDDPDHVRNIQHAAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 614
TEAPL P+ + + A YVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPI
Sbjct: 106 TEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPI 165
Query: 615 YEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFIPPPSGKSFV--TSRRTVYVAXDFE 788
YEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F + + V + YVA DFE
Sbjct: 166 YEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTF-STTAEREIVRDIKEKLCYVALDFE 224
Query: 789 Q 791
Q
Sbjct: 225 Q 225
Score = 106 bits (255), Expect = 3e-24
Identities = 58/127 (45%), Positives = 69/127 (54%)
Frame = +1
Query: 124 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVVWDRRTLM*EMRHRAK 303
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MV ++ ++K
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 304 XXXXXXXXXXXXXXXLTGMTWRRFGIIPSTMSCVSPPRNTQSCSLRLPFNPKANREKMTQ 483
+ P P NPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 484 IMFETFN 504
I+FETFN
Sbjct: 122 IIFETFN 128
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 159 bits (386), Expect = 4e-40
Identities = 70/158 (44%), Positives = 107/158 (67%)
Frame = +3
Query: 246 RDGGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 425
+ G + KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 426 VLLTEAPLQPQGQQREDDPDHVRNIQHAAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 605
+LLTE P+ P + + +YVAIQAVLSLYA G ++G+V+DSGDGV+H
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHI 162
Query: 606 VPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 719
VP+YE L H + RLD+AGRD T YL+ +L +GY+F
Sbjct: 163 VPVYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAF 200
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 130 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 234
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 157 bits (380), Expect = 2e-39
Identities = 78/177 (44%), Positives = 114/177 (64%), Gaps = 3/177 (1%)
Frame = +3
Query: 264 QKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTE 440
QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEHP+LLTE
Sbjct: 53 QKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTE 112
Query: 441 APLQPQGQQREDDPDHVRNIQHAAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 620
PL + + + A+ ++Q VL+LYAS RTTGIVL+ GDG++H+VPIY+
Sbjct: 113 PPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYD 172
Query: 621 GYALPHAILRLDLAGRDLTDYLMKILTERGYSFIPPPSGKSFV--TSRRTVYVAXDF 785
G+++P AI + ++ GRD+TDYL L + G+ + + K V + YVA DF
Sbjct: 173 GFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELV-SSAEKEIVREIKEKCCYVASDF 228
Score = 55.2 bits (127), Expect = 1e-08
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = +1
Query: 142 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM 252
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVM 48
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 122 bits (294), Expect = 6e-29
Identities = 61/155 (39%), Positives = 90/155 (58%), Gaps = 9/155 (5%)
Frame = +3
Query: 270 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 446
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 447 LQPQGQQREDDPDHVRNIQHAAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSH 602
L P + + A +Y+A+QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 603 TVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 707
+P+ EGY + +I + LAGRD+T ++ +L +R
Sbjct: 193 IIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDR 227
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +1
Query: 142 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 225
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 70.1 bits (164), Expect = 3e-13
Identities = 37/138 (26%), Positives = 66/138 (47%)
Frame = +3
Query: 312 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLQPQGQQREDDPDHV 491
+ +K I +G V NWD +W + +L+ P EHP+L+TE P + +
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 492 RNIQHAAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 671
+++ A Y+A Q + +ASG+ T ++D G S IY+G+ L +G
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNA 182
Query: 672 LTDYLMKILTERGYSFIP 725
+ D L + L ++ + +P
Sbjct: 183 INDILAQTLRDKNFEVMP 200
Score = 40.3 bits (90), Expect = 3e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 127 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 228
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 66.9 bits (156), Expect = 3e-12
Identities = 43/162 (26%), Positives = 83/162 (51%), Gaps = 4/162 (2%)
Frame = +3
Query: 246 RDGGMGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 422
RD + + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 423 PVLLTEAPLQPQGQQREDDPDHVRNIQHA-AMYVAIQAVLSLYASGR--TTGIVLDSGDG 593
P+ +TE PL R + + + +A ++ I + S Y + + ++GIVL+ G+
Sbjct: 117 PICMTE-PLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNA 175
Query: 594 VSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF 719
SH +P+ G + R+ G + YL+K+ + SF
Sbjct: 176 ASHVIPVLNGERILSEAKRISWGGSQSSSYLLKLFQIKYPSF 217
Score = 35.9 bits (79), Expect = 0.007
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +1
Query: 142 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 237
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 65.7 bits (153), Expect = 7e-12
Identities = 42/180 (23%), Positives = 81/180 (45%), Gaps = 2/180 (1%)
Frame = +3
Query: 267 KDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 440
++ YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 49 RNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108
Query: 441 APLQPQGQQREDDPDHVRNIQHAAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 620
PQ +++ + A Y+ QAV +A+ ++T +++D G + P+ +
Sbjct: 109 PSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDNASVTPVVD 168
Query: 621 GYALPHAILRLDLAGRDLTDYLMKILTERGYSFIPPPSGKSFVTSRRTVYVAXDFEQGNG 800
G + I + LAG L + ++ F PP + +R++V + NG
Sbjct: 169 GLIIRKGIFKQSLAGDFLNANIEQLFNTMNIEF-PP----HYRIARKSVAIQQSGNMANG 223
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 127 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 228
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 50.8 bits (116), Expect = 2e-07
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 4/130 (3%)
Frame = +3
Query: 327 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLQPQGQQREDDPDHVR 494
PI+ G V +W+ ++ W H Y+ L P + +PV L +
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 495 NIQHAAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 674
Q +A + ++ LYA G G+V+D G + PI +G + A +L L GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 675 TDYLMKILTE 704
T +L +L E
Sbjct: 232 TQHLQNLLRE 241
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 41.5 bits (93), Expect = 1e-04
Identities = 16/51 (31%), Positives = 33/51 (64%)
Frame = +3
Query: 570 IVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFI 722
+V+DSG +H +P+ + A+ R+D+ G+ LT+YL ++++ R Y+ +
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEVISYRKYNMM 209
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 31.5 bits (68), Expect = 0.14
Identities = 13/64 (20%), Positives = 34/64 (53%)
Frame = +3
Query: 528 QAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKILTER 707
+++ + + +G + V+D G + + EG +P++ ++++ G D+T MK+L
Sbjct: 280 ESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKLLMRS 339
Query: 708 GYSF 719
+ +
Sbjct: 340 HFPY 343
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 27.5 bits (58), Expect = 2.3
Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 4/72 (5%)
Frame = +2
Query: 497 HSTRRHVRRHPS----RALAVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSR 664
HST R P+ R R RS HR+ G RR P+R HL R RH +
Sbjct: 121 HSTSRSRSTSPANRHRRKEKERTRSNHRH--GSHRRHEPYRTHLSRHH---RHSTTNYHS 175
Query: 665 SRPHRLPHEDPH 700
R R H
Sbjct: 176 KRDDRYERRREH 187
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 553 PVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 645
P VP S P+ P P PS++ P PS
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 172 KAGFAGDDAP-RAVFPSIVGRPRHQGVMVVWD 264
KA F+G R+ + VG+P H G++ WD
Sbjct: 1533 KAKFSGQKGTLRSKYSLEVGKPMHYGIISEWD 1564
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = +1
Query: 562 PPVSCWTPATVSPTPCPSTKDTHSP 636
PPV+C TP P C K H P
Sbjct: 631 PPVACGTPIPDCPYLCVLPKSCHHP 655
>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 668 RPHRLPHEDPHRARLLVHTTAEREIVRDIKENCVR 772
RP + P DPH + L + +++ KE+C R
Sbjct: 263 RPQKPPQIDPHSSSLADEYRESNKRLQESKESCAR 297
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 25.4 bits (53), Expect = 9.5
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = -2
Query: 611 GHGVGDTVAGVQHDTGGTTGRVQREHGLDGDVHGGVLNVS 492
G G GDTV GG GR R D D H + N S
Sbjct: 139 GRGAGDTVVSRSSGAGGARGR--RFGWKDYDKHQRLRNAS 176
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +3
Query: 699 TERGYSFIPPPSGKSFVTSR 758
T +GYSF PP KS V R
Sbjct: 699 TSQGYSFYRPPKPKSSVRKR 718
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,430,153
Number of Sequences: 5004
Number of extensions: 74364
Number of successful extensions: 264
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -