Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0027
         (801 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    26   0.35 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.4  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   5.8  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   5.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 26.2 bits (55), Expect = 0.35
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -1

Query: 267 SVPYHHHALMAGPSHDRGEHGARSIISCETGLAHT 163
           + P+HHH+  A P H      A S       + HT
Sbjct: 428 ATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHT 462


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 542 AVRVRSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRP 673
           ++  +++HR        C P   +L +I + P HP +  S S P
Sbjct: 62  SLTAQAHHRLYPAFSSSCDPVPGNLEQIGSRPLHPPAS-STSLP 104


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 228 KAPPSGRDGGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDD 362
           K  P G  G  G+K      E   KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 228 KAPPSGRDGGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDD 362
           K  P G  G  G+K      E   KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,465
Number of Sequences: 438
Number of extensions: 5936
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)