Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0026
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 59 5e-10
SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces pomb... 52 1e-07
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom... 38 0.001
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 28 1.5
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 28 1.5
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 28 1.5
SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc... 28 1.5
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem... 27 2.7
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 27 3.6
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 6.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 6.2
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 25 8.2
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 59.3 bits (137), Expect = 5e-10
Identities = 35/104 (33%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Frame = +3
Query: 357 SLTETLGIES---HAGFFTVDEKFNSNMYFWYFPPLSKNEAAPVLLWLQGGPGAAPYSGS 527
S E+LGI++ + G+ V++ + +++FW+F + E PV+LWL GGPG + +G
Sbjct: 576 SKPESLGIDTVKQYTGYLDVED--DRHLFFWFFESRNDPENDPVVLWLNGGPGCSSLTGL 633
Query: 528 LRKSGR*S-QARTVLPKESIIG-AKNYHLIFIDNPVGTGFSFTD 653
+ G S T+ P+ + N +IF+D P+ TGFS D
Sbjct: 634 FMELGPSSINIETLKPEYNPHSWNSNASVIFLDQPINTGFSNGD 677
>SPBC16G5.09 |||serine carboxypeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 510
Score = 51.6 bits (118), Expect = 1e-07
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Frame = +3
Query: 387 HAGFFTVDEKFNSNMYFWYFPPLSKNEAAPVLLWLQGGPGAAPYSGSLRKSG--R*SQAR 560
HAG ++ + +++FW F + +LWL GGPG + GSL + G R
Sbjct: 46 HAGHLNQTDQLDGDLFFWMFESVKPEYEHRSILWLNGGPGCSSEDGSLMEVGPFRLDDNN 105
Query: 561 TVLPKESIIGAKNYHLIFIDNPVGTGFSFT 650
T +L+F+D P+GTG+S++
Sbjct: 106 TFQLNPGRWDELG-NLLFVDQPLGTGYSYS 134
>SPAC1296.03c |sxa2||serine carboxypeptidase
Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 37.9 bits (84), Expect = 0.001
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Frame = +3
Query: 381 ESHAGFFTVDEKFNSNMYFWYFPPLSKNEAAPVLLWLQGGPGAAPYSGSLRKSG--R*SQ 554
E ++G+ + + ++++ Y P + +E ++WLQGGPG A G ++G SQ
Sbjct: 73 ELYSGYLEANS--DKSLFYTYAPAVVDSET--FIVWLQGGPGCAGTLGFFSENGPIEISQ 128
Query: 555 ARTVLPKESIIGAKNY-HLIFIDNPVGTGFS 644
+ + P + N+ +++++D P GTG+S
Sbjct: 129 S-SPSPSLNPESWTNFANMLWLDQPFGTGYS 158
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 27.9 bits (59), Expect = 1.5
Identities = 22/61 (36%), Positives = 32/61 (52%)
Frame = +1
Query: 385 VTRDSLQLTRSSIQICTFGISRLYRRTKLHRFCCGCKEVPGQLLIRALYGSRAADRKQGR 564
V +L LT + +Q +FG+ + T +H+F K+ QLLI A + AD K GR
Sbjct: 794 VLPSALNLTSALLQ--SFGLYLV--DTHIHQFLYIGKDAVPQLLIDAFGVNSLADLKAGR 849
Query: 565 F 567
F
Sbjct: 850 F 850
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 27.9 bits (59), Expect = 1.5
Identities = 25/92 (27%), Positives = 46/92 (50%)
Frame = -3
Query: 549 ISGPTSVKSPNKELPRDLLAATAKPVQLRSSIKAGNTKSTYLN*TSRQL*RIPRDSRSQV 370
IS PT+++S LP LL K + + +G T + YL ++L R+P++ ++
Sbjct: 159 ISAPTAIQSCC--LPA-LLNTDDKDAFIEAQTGSGKTLA-YLLPIVQRLIRLPKNLHTRT 214
Query: 369 FPSMTLLIVPGRGLWTRF*EMASA*EDPPLSH 274
+++ P R L + +A+ + PLSH
Sbjct: 215 SGIYAVIMAPTRELCQQIYNVANKLNNNPLSH 246
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 267 RPNDSAGDPLMLTPFLKNESIAL 335
+PN ++G PL +TPFL+ S ++
Sbjct: 263 QPNATSGSPLSVTPFLQKTSTSI 285
>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 313
Score = 27.9 bits (59), Expect = 1.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 267 RPNDSAGDPLMLTPFLKN 320
+ NDS GDPL +P+L+N
Sbjct: 86 KENDSTGDPLYNSPYLRN 103
>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
membrane translocase Oxa101|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 27.1 bits (57), Expect = 2.7
Identities = 17/67 (25%), Positives = 30/67 (44%)
Frame = +3
Query: 177 RSAVCFVFFYFVPAERR*ISECLSTSKLDARPNDSAGDPLMLTPFLKNESIALAQELSRV 356
+SAV F FFY + R + +T L + S DP + P + + +++R
Sbjct: 169 QSAVFFSFFYAIRKMSRLSVDGFTTGGLAWFKDLSIPDPYCILPIINAGLMFSGMQMNRA 228
Query: 357 SLTETLG 377
+ T+G
Sbjct: 229 NTASTIG 235
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.6 bits (56), Expect = 3.6
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 421 IQICTFGISRLYRR-TKLHRFC 483
I+I FG+S LYRR ++L FC
Sbjct: 280 IKIIDFGLSNLYRRQSRLRTFC 301
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 6.2
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 509 SSLFGLFTEVGPLIASKDGFAKREYHWG*ELSPDFHRQPRG 631
SSLF F V PLI+ + R + L+ DF R+P G
Sbjct: 815 SSLFSSFNSVNPLISLEPNPLNRTLNNSVNLT-DFGRKPNG 854
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 6.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +1
Query: 187 CVLFFSTLFPLNGAKFPNVYPRVSWTLDLMTQRGILS 297
CV STL+P+ P +Y DL +QR L+
Sbjct: 293 CVEVVSTLYPVLSIICPTLYSVYKDIFDLFSQRSFLA 329
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 214 PLNGAKFPNVYPRVSWTL 267
PL KFP++ RVSW+L
Sbjct: 248 PLTEEKFPDIAWRVSWSL 265
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,858,004
Number of Sequences: 5004
Number of extensions: 58243
Number of successful extensions: 173
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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