Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0026
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   8.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.9  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 448 GKYQKYIFELNFSSTVKN 395
           GKY++YI   N+S    N
Sbjct: 194 GKYKEYIIPANYSGWYLN 211


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 448 GKYQKYIFELNFSSTVKN 395
           GKY++YI   N+S    N
Sbjct: 194 GKYKEYIIPANYSGWYLN 211


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +3

Query: 219 ERR*ISECLSTSKLDARPNDSAGDPLMLTPFLKNESIALAQELSRVSLT 365
           E+R +++ L T  +  RP  +  +PL+L+  L    I    E +++ +T
Sbjct: 24  EKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDVDEKNQLLIT 72


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +2

Query: 428 YVLLVFPAFIEERSCTGFAVAARRSRGSSLFGLFTEVGPLIAS 556
           ++++  P FI     TGFA+     +  ++ G  T +G  I +
Sbjct: 96  FMMIKTPIFIYNSFNTGFALGNLGCQIFAVIGSLTGIGAAITN 138


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,930
Number of Sequences: 438
Number of extensions: 4564
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)