Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0025
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    61   2e-10
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    29   0.75 
SPAC343.03 |apc11||anaphase-promoting complex subunit Apc11|Schi...    28   1.7  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    27   2.3  
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    26   5.3  
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch...    25   9.2  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 61.3 bits (142), Expect = 2e-10
 Identities = 26/92 (28%), Positives = 50/92 (54%)
 Frame = +2

Query: 233 GCIYVC*AVQTFIHTNNWMMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTIG 412
           G  Y+  A   ++  + W +I+ F +S+  L  LI+K    P N   L  FT ++  T+G
Sbjct: 78  GIFYLHPAFSFWVQMHPWFLILNFFISLVVLFGLIMKPYSYPRNYIFLFLFTALEGLTLG 137

Query: 413 VVVSYYNTMVVLQALALTFAVVFSLTLYTLNS 508
             +++++  ++L+A+ +T  V  +LT +T  S
Sbjct: 138 TAITFFSARIILEAVFITLGVFVALTAFTFQS 169



 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +3

Query: 51  MASIPLMYAQEDCELGGKESVEDDFAYRNNVMNAEREIRLAFIRKVYGLLTVQLLATVSI 230
           +A  P  Y++ + E   +    D F     V    + IR+AF+RKVY +LT QL  T   
Sbjct: 18  LAQAPPAYSEYN-ESATENPAVDQFKNTTPVAECAKSIRMAFLRKVYAILTAQLFVTSLF 76

Query: 231 AAVF 242
             +F
Sbjct: 77  GGIF 80


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -1

Query: 149  IHYIVAVCKVILNRFLPS*FTVFLGVH*RYRSHFHKFRWVF 27
            + Y+V +   +LN+F    FT  +GV   YRS  H+ R  F
Sbjct: 1510 VEYLVNMVDELLNKFPDVNFTGRIGVITPYRSQLHELRRAF 1550


>SPAC343.03 |apc11||anaphase-promoting complex subunit
           Apc11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 94

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = -1

Query: 731 KV*IDGC-PRCTPPGXRTLIIW 669
           +V  DGC P+CT PG    I+W
Sbjct: 28  RVPFDGCCPQCTSPGDNCPIVW 49


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 9/31 (29%), Positives = 22/31 (70%)
 Frame = +2

Query: 344 RRDSPANLYLLAAFTVIQAYTIGVVVSYYNT 436
           ++D   +L++LAA+  ++ + + +V+ Y+NT
Sbjct: 208 QKDFHFDLHILAAYLGVEGHPLDLVIDYHNT 238


>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +2

Query: 371 LLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFAVVFSLTLYTLNSNGTSHSL 529
           L+  +  + A +I V+V Y+  + +L       A +FS+      +NG S+SL
Sbjct: 153 LVEKYAHLLAISIVVIVCYFKHLPLLPWTFTVEACLFSIQFVLDRNNGPSYSL 205


>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 261

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/40 (30%), Positives = 15/40 (37%)
 Frame = -3

Query: 717 WLPKMYSSGXQDPHHLVRVXNEEHAEEYRADDGQSHFEGG 598
           WLP+    G    H+       E    +R D G   F GG
Sbjct: 184 WLPRKLGGGLGGRHYTKERPRRERGSRFRGDSG---FRGG 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,277,039
Number of Sequences: 5004
Number of extensions: 67407
Number of successful extensions: 185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)