Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0025
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0554 - 4121692-4121895,4121991-4122148,4123241-4123354,412... 50 2e-06
03_06_0293 - 32889813-32890019,32890144-32890301,32891310-328914... 50 2e-06
03_06_0292 - 32886148-32886354,32886997-32887154,32887265-328873... 47 1e-05
03_05_1105 + 30438140-30438350,30438448-30438926 46 3e-05
05_04_0254 - 19444409-19444621,19444724-19444887,19444974-194450... 44 1e-04
07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155 38 0.007
11_06_0192 + 21128298-21128829,21129341-21129407,21131169-211312... 37 0.016
04_01_0097 - 998766-999383,999479-999861,1000021-1000398,1000486... 30 2.4
11_08_0094 - 28314681-28314747,28315264-28315353,28315589-283157... 29 4.1
11_04_0293 + 15926561-15928834 29 5.5
04_04_0689 - 27292271-27292709,27293717-27293856,27294572-272946... 28 9.6
03_05_0426 - 24140298-24140434,24141303-24141359,24141466-241415... 28 9.6
>07_01_0554 -
4121692-4121895,4121991-4122148,4123241-4123354,
4123824-4124082
Length = 244
Score = 50.4 bits (115), Expect = 2e-06
Identities = 27/76 (35%), Positives = 39/76 (51%)
Frame = +2
Query: 272 HTNNWMMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQ 451
H + I IL L L + P NL LL FTV ++ +G+ ++ + V+L+
Sbjct: 71 HAGLGLYIFLIILPFIVLCPLYYYHQKHPVNLILLGLFTVAISFAVGMTCAFTSGKVILE 130
Query: 452 ALALTFAVVFSLTLYT 499
+ LT VVFSLT YT
Sbjct: 131 SAILTTVVVFSLTAYT 146
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +3
Query: 144 MNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPYRHLY 272
M E+R A IRK+Y +L++QLL T ++AAV + V H +
Sbjct: 25 MTEPPEMRWALIRKIYVILSMQLLLTAAVAAVVVKVRAISHFF 67
>03_06_0293 -
32889813-32890019,32890144-32890301,32891310-32891423,
32891531-32891777
Length = 241
Score = 50.4 bits (115), Expect = 2e-06
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Frame = +2
Query: 266 FIHTNNWMMIIAFILSMGTLIALIVK--RRDSPANLYLLAAFTVIQAYTIGVVVSYYNTM 439
F+ +N + F+L + ++ ++ + P NL LL FTV ++ +G+ +Y +
Sbjct: 63 FVSSNAGFALYIFLLFLPLIVLCPLRYYHQKHPVNLLLLGLFTVAISFAVGMTCAYTSGK 122
Query: 440 VVLQALALTFAVVFSLTLYTLNSNGTSHSLD 532
V+ +A ALT VV SLT YT + H +
Sbjct: 123 VIFEAAALTAVVVISLTAYTFWAAKRGHDFN 153
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 159 EIRLAFIRKVYGLLTVQLLATVSIAA 236
++R A I K+Y +L+VQL T ++AA
Sbjct: 26 DLRWALIHKIYVILSVQLAMTAAVAA 51
>03_06_0292 -
32886148-32886354,32886997-32887154,32887265-32887378,
32887660-32887924
Length = 247
Score = 47.2 bits (107), Expect = 1e-05
Identities = 25/93 (26%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Frame = +2
Query: 233 GCIYVC*AVQTFIHTNNWMMIIAFILSMGT----LIALIVKRRDSPANLYLLAAFTVIQA 400
G + + ++TF +++A+++ + + ++ +I R P NL+ L FTV +
Sbjct: 56 GAVNLVEPIKTFFQARTPEVLVAYVIIIISPLIMMLPMIYFRNKHPINLFFLLLFTVCIS 115
Query: 401 YTIGVVVSYYNTMVVLQALALTFAVVFSLTLYT 499
+++G+ N V+ QA +T A+V LT YT
Sbjct: 116 FSVGLGCLSKNGTVIFQAAGMTAAIVIGLTCYT 148
Score = 41.1 bits (92), Expect = 0.001
Identities = 18/38 (47%), Positives = 27/38 (71%)
Frame = +3
Query: 159 EIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPYRHLY 272
++R AFIRKVY +++VQLL TV++A VEP + +
Sbjct: 31 QLRWAFIRKVYVIVSVQLLVTVAVAGAVNLVEPIKTFF 68
>03_05_1105 + 30438140-30438350,30438448-30438926
Length = 229
Score = 46.0 bits (104), Expect = 3e-05
Identities = 26/71 (36%), Positives = 37/71 (52%)
Frame = +2
Query: 287 MMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALT 466
+ I IL L L + P NL LLA FT ++ +G+ ++ V+L++ LT
Sbjct: 60 LYIFLIILPFIVLCPLYYYYQRHPVNLLLLALFTAAISFAVGLTCAFTKGEVILESAILT 119
Query: 467 FAVVFSLTLYT 499
AVV SLT YT
Sbjct: 120 AAVVVSLTAYT 130
Score = 44.0 bits (99), Expect = 1e-04
Identities = 16/33 (48%), Positives = 28/33 (84%)
Frame = +3
Query: 159 EIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEP 257
++R AF+RKVY +L++Q+L T+++A+V +FV P
Sbjct: 14 QLRWAFVRKVYAILSIQMLLTIAVASVVVFVRP 46
>05_04_0254 -
19444409-19444621,19444724-19444887,19444974-19445087,
19446086-19446395
Length = 266
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/71 (33%), Positives = 38/71 (53%)
Frame = +2
Query: 287 MMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALT 466
+ ++ +L ++ L + P N L FT+ +++IGV + +VL+AL LT
Sbjct: 93 LALVLAVLPFVLMVPLYHYQHKHPHNFVYLGLFTLCLSFSIGVACANTQGKIVLEALILT 152
Query: 467 FAVVFSLTLYT 499
AVV SLT YT
Sbjct: 153 SAVVASLTAYT 163
Score = 35.9 bits (79), Expect = 0.036
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 141 VMNAEREIRLAFIRKVYGLLTVQLLATVSIAAV 239
+ E +R F+RKVYG+L QLL T +++A+
Sbjct: 44 ISRGESALRWGFVRKVYGILAAQLLLTTAVSAL 76
>07_01_0553 - 4119782-4119988,4120160-4120320,4120861-4121155
Length = 220
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/38 (47%), Positives = 24/38 (63%)
Frame = +3
Query: 159 EIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPYRHLY 272
E+R AFIRKVY ++ QL+ TV+IAA V R +
Sbjct: 41 ELRWAFIRKVYAIVATQLVVTVAIAAAVYSVPAIRRFF 78
Score = 34.3 bits (75), Expect = 0.11
Identities = 20/69 (28%), Positives = 34/69 (49%)
Frame = +2
Query: 293 IIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALTFA 472
I+A L + IA V + +L + A+ + +V + +++A +LTF
Sbjct: 53 IVATQLVVTVAIAAAVYSVPAIRRFFLARTPASLAAFVLVIVAPLIAGIAIIEAASLTFG 112
Query: 473 VVFSLTLYT 499
+VF LTLYT
Sbjct: 113 LVFGLTLYT 121
>11_06_0192 +
21128298-21128829,21129341-21129407,21131169-21131211,
21131301-21131367,21131613-21131770,21131863-21132057
Length = 353
Score = 37.1 bits (82), Expect = 0.016
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +3
Query: 96 GGKESVEDDFAYRNNVMNAEREIRL--AFIRKVYGLLTVQLLATVSIAAVFMFVEP 257
G KE V + R V E + RL AF+RKVY +L +Q T +IA V V P
Sbjct: 55 GEKEVVAEKAPARRKVAAEEEDPRLRWAFVRKVYCILALQFAVTAAIAVVAWAVRP 110
>04_01_0097 -
998766-999383,999479-999861,1000021-1000398,
1000486-1000711,1000799-1001323,1003032-1003164,
1004353-1004435,1004645-1005349,1005483-1005556,
1006290-1006392,1006485-1006727
Length = 1156
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -1
Query: 248 KHKYSRNGDRSQELHCQETVDFPYKGKTDLPFSIHYIVAVCKVIL 114
K SRN R Q+L ++ + K K LP S YIV +C+ +L
Sbjct: 343 KQVQSRNNSRRQKLEGDKS-EVGEKRKRALPSSSQYIVVMCRSVL 386
>11_08_0094 -
28314681-28314747,28315264-28315353,28315589-28315725,
28317020-28317589
Length = 287
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 60 IPLMYAQEDCELGGKESVED-DFAYRNNVMNAEREIRLAFIRKV 188
+PL Y +DC++ G + ++D D A N + E + RL + +V
Sbjct: 191 LPLFYFGDDCDMWGGDMLKDTDIALAPNFPSDEGQKRLEHLHRV 234
>11_04_0293 + 15926561-15928834
Length = 757
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 654 EEHAEEYRADDGQSHFEGGALHHQLKKTPQNENCQTSYEHVSNE 523
+E EEY +DDG+ +GG L L + Q+ + +T E S +
Sbjct: 360 DEEEEEYLSDDGKDDDDGGGLQAPL-LSRQSTDVETKNEPASGQ 402
>04_04_0689 -
27292271-27292709,27293717-27293856,27294572-27294664,
27295614-27296012,27296258-27296392,27296482-27296835
Length = 519
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 639 LQHVPRXRHAPDDEGPVPRRSTSWATINLYFGHSETISCTY 761
L H+ + HA ++ G V RR T+W +N + G +E S Y
Sbjct: 214 LSHIEK--HADNNYGSVIRRKTNWVQLNPH-GEAEKQSAGY 251
>03_05_0426 -
24140298-24140434,24141303-24141359,24141466-24141503,
24141638-24141732
Length = 108
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -1
Query: 536 MYPMNEKSRWN*ACTV*EKIRRRMLKPELATP 441
+YP N+ SRW T ++ R+R L P L P
Sbjct: 24 LYPFNQASRW--MTTFLQQFRKRALLPPLHAP 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,765,453
Number of Sequences: 37544
Number of extensions: 459643
Number of successful extensions: 1118
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1118
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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