Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0025
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34537| Best HMM Match : UPF0005 (HMM E-Value=6.5e-05)               52   7e-07
SB_31077| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_28532| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.2  
SB_40169| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_29731| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  

>SB_34537| Best HMM Match : UPF0005 (HMM E-Value=6.5e-05)
          Length = 179

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 23/49 (46%), Positives = 34/49 (69%)
 Frame = +2

Query: 254 AVQTFIHTNNWMMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQA 400
           A++ F+ +   ++ +AFILS G LIAL+ KRR+SP N+YLL  F   Q+
Sbjct: 68  AIKDFVQSRPEVLFVAFILSFGFLIALMFKRRESPMNMYLLFGFMFFQS 116



 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 21/46 (45%), Positives = 31/46 (67%)
 Frame = +3

Query: 108 SVEDDFAYRNNVMNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFM 245
           S+E+DF Y   V      +RL F+RKVYG+L+ QL  T+ ++A+FM
Sbjct: 19  SIEEDFTYGVTVAQTNINVRLGFLRKVYGILSAQLGLTILVSALFM 64



 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 21/53 (39%), Positives = 33/53 (62%)
 Frame = +1

Query: 592 QSAAFEMALSIVGAIFFSMFLVXDTHQMMRVLXPGGVHLGQPSIYTLDILKLF 750
           QS   E+A +++GA+ FS F+V DTH +M  + P    L   ++Y +DI+ LF
Sbjct: 115 QSDILELAYAVLGALLFSAFIVFDTHMLMNKMSPEEYILASINLY-MDIINLF 166


>SB_31077| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 109

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/76 (23%), Positives = 35/76 (46%)
 Frame = +2

Query: 272 HTNNWMMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQ 451
           HT   + II+  ++   +I +I+K  D P   +LL   T++   TI   ++    ++   
Sbjct: 20  HTTVIIFIISTPITTTIVIIIIIKSLDEPPPCHLLPFTTIVIITTITTPITTTIVIITTI 79

Query: 452 ALALTFAVVFSLTLYT 499
              +T  +V   T+ T
Sbjct: 80  TTPITTTIVIITTITT 95


>SB_28532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -3

Query: 705 MYSSGXQDPHHLVRVXNEEHAEEYRADDGQSHFEGGALHHQLKK 574
           MY+ G +  HH VR  +     +Y  DD ++ F+G  +   +KK
Sbjct: 66  MYTYGAKLVHHSVRTISTNRTAQYLVDDVRATFDGENICVLVKK 109


>SB_7902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1020

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
 Frame = +2

Query: 293 IIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTI--GVVVSYYNTMVVLQAL--- 457
           I+AF+L+  T++ + +K R SP         +++   TI  G ++ ++    V  A    
Sbjct: 586 ILAFLLTNLTIL-MFIKHRTSPVVRACSFEISIVLLCTIALGFLIPFFEIGKVSDASCKT 644

Query: 458 -ALTFAVVFSLTL 493
            A TFAVVF+ TL
Sbjct: 645 SAFTFAVVFAATL 657


>SB_40169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 728

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
 Frame = -3

Query: 618 QSHFEGGALHHQLKKTPQNENCQTSYEHVSNE*EVPLE---LSVYSVRENTT---ANVKA 457
           + H +G  LHH L    QN  C   ++  S E    +E   +S +S  E+T+    +VK 
Sbjct: 663 EEHQDG--LHHSLVSMTQNPECSIDFDSQSLESRPWMECCVMSYHSTPEDTSKIRRSVKY 720

Query: 456 RACNTTMV 433
           R   TT+V
Sbjct: 721 RIFGTTLV 728


>SB_29731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 639 EYRADDGQSHFEGGALHHQLKKTPQNENCQTSY 541
           E+  DD  +H+   A   QL KTP N + Q +Y
Sbjct: 49  EHYLDDINTHYSVKATTLQLNKTPDNTHAQKNY 81


>SB_12742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1077

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 358 GRIASFHDQCNQSSHA*DKSNDHHPIIGVYKCL 260
           G + +  D+C+Q +H  +K+   H I G YKC+
Sbjct: 554 GDLCTDIDECHQKAHLCNKNALCHNIPGSYKCM 586


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,266,375
Number of Sequences: 59808
Number of extensions: 549144
Number of successful extensions: 1287
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1287
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)