Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0025
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    25   1.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    25   1.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    25   1.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    25   1.0  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   5.6  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    22   7.4  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   7.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   7.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   7.4  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 672 DDEGPVPRRSTSWATINLYFGHSETISC 755
           +DEG + R+S S  ++N Y   ++TI+C
Sbjct: 220 NDEGTL-RKSPSLTSLNAYLIKNQTITC 246


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 672 DDEGPVPRRSTSWATINLYFGHSETISC 755
           +DEG + R+S S  ++N Y   ++TI+C
Sbjct: 220 NDEGTL-RKSPSLTSLNAYLIKNQTITC 246


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 672 DDEGPVPRRSTSWATINLYFGHSETISC 755
           +DEG + R+S S  ++N Y   ++TI+C
Sbjct: 271 NDEGTL-RKSPSLTSLNAYLIKNQTITC 297


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 672 DDEGPVPRRSTSWATINLYFGHSETISC 755
           +DEG + R+S S  ++N Y   ++TI+C
Sbjct: 220 NDEGTL-RKSPSLTSLNAYLIKNQTITC 246


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -2

Query: 436 GVVV*HDNADSVRLDNSKCSQEIQIGGRIASFHDQCNQ-SSHA*DKS 299
           G+V     A+  ++D  K  +++++G  + +  + C Q  +HA +K+
Sbjct: 490 GIVYHLSKAELDKMDKEKKLEDLEMGTPLENILESCQQDETHAPEKT 536


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -3

Query: 612 HFEGGALHHQLKKTPQNENCQTS 544
           H+  G  H QL  TP++ + + S
Sbjct: 371 HYSNGQTHSQLCPTPRSTHLKVS 393


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -3

Query: 564 NENCQTSYEHVSNE*EVPLELSVY 493
           N NC+  Y +++   ++P+ + VY
Sbjct: 101 NNNCKKLYYNINYIEQIPIPVPVY 124


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -3

Query: 564 NENCQTSYEHVSNE*EVPLELSVY 493
           N NC+  Y +++   ++P+ + VY
Sbjct: 106 NNNCKKLYYNINYIEQIPIPVPVY 129


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -3

Query: 564 NENCQTSYEHVSNE*EVPLELSVY 493
           N NC+  Y +++   ++P+ + VY
Sbjct: 106 NNNCKKLYYNINYIEQIPIPVPVY 129


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -3

Query: 564 NENCQTSYEHVSNE*EVPLELSVY 493
           N NC+  Y +++   ++P+ + VY
Sbjct: 106 NNNCKKLYYNINYIEQIPIPVPVY 129


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,704
Number of Sequences: 438
Number of extensions: 4718
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)