Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0025
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15470.1 68417.m02364 expressed protein low similarity to N-m...    52   6e-07
At4g02690.1 68417.m00364 hypothetical protein low similarity to ...    50   2e-06
At3g63310.1 68416.m07121 expressed protein low similarity to N-m...    48   9e-06
At1g03070.1 68414.m00281 expressed protein low similarity to N-m...    48   9e-06
At4g14730.1 68417.m02265 transmembrane protein-related low simil...    46   4e-05
At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family...    29   2.6  

>At4g15470.1 68417.m02364 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 256

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 31/72 (43%), Positives = 43/72 (59%)
 Frame = +2

Query: 284 WMMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALAL 463
           ++ I+ FIL    +  L +  +  P NL LLA FTV  ++T+GV  +     +VLQAL L
Sbjct: 90  FLCIVPFIL----IWPLHIYHQKHPVNLILLALFTVSLSFTVGVSCAMTEGRIVLQALIL 145

Query: 464 TFAVVFSLTLYT 499
           T +VV SLT YT
Sbjct: 146 TLSVVGSLTAYT 157



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 20/41 (48%), Positives = 26/41 (63%)
 Frame = +3

Query: 153 EREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPYRHLYT 275
           E ++R  FIRKVYG+L+ QLL T  I+AV +   P   L T
Sbjct: 42  ENQLRWGFIRKVYGILSAQLLLTTLISAVVVLNPPVNDLLT 82


>At4g02690.1 68417.m00364 hypothetical protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104, NMDA receptor
           glutamate-binding subunit [Rattus sp.] GI:8248741;
           contains Pfam profile PF01027: Uncharacterized protein
           family UPF0005
          Length = 248

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 25/71 (35%), Positives = 39/71 (54%)
 Frame = +2

Query: 287 MMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALT 466
           + I+  I  +  L  L    +  P N  LL  FT+  A+ +G+  ++ N  V+L+++ LT
Sbjct: 79  LYIVIIITPLIVLCPLYYYHQKHPVNYLLLGIFTLALAFVVGLTCAFTNGKVILESVILT 138

Query: 467 FAVVFSLTLYT 499
             VV SLTLYT
Sbjct: 139 SVVVLSLTLYT 149



 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 26/64 (40%), Positives = 35/64 (54%)
 Frame = +3

Query: 66  LMYAQEDCELGGKESVEDDFAYRNNVMNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFM 245
           L Y ++D E G   S      Y    M+   E+R  FIRKVY ++  QLLATV++AA  +
Sbjct: 6   LPYRKDDVETG--VSSRRPLLYP--AMHENPELRWGFIRKVYSIIAFQLLATVAVAATVV 61

Query: 246 FVEP 257
            V P
Sbjct: 62  TVRP 65


>At3g63310.1 68416.m07121 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 239

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 24/82 (29%), Positives = 42/82 (51%)
 Frame = +2

Query: 287 MMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALT 466
           + I+  +  +  +  L    +  P N  LL  FTV  A+ +G+  ++ +  V+L+++ LT
Sbjct: 70  LYILLILTPLIVMCPLYYYHQKHPVNYLLLGIFTVALAFAVGLTCAFTSGKVILESVILT 129

Query: 467 FAVVFSLTLYTLNSNGTSHSLD 532
             VV SLTLYT  +    H  +
Sbjct: 130 AVVVISLTLYTFWAAKRGHDFN 151



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/45 (37%), Positives = 30/45 (66%)
 Frame = +3

Query: 141 VMNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPYRHLYT 275
           +M+   E+R +FIRKVY ++++QLL T+++AA  + V      +T
Sbjct: 18  MMSESPELRWSFIRKVYSIISIQLLVTIAVAATVVKVHSISVFFT 62


>At1g03070.1 68414.m00281 expressed protein low similarity to
           N-methyl-D-aspartate receptor-associated protein
           [Drosophila melanogaster] GI:567104; contains Pfam
           profile PF01027: Uncharacterized protein family UPF0005
          Length = 247

 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 24/71 (33%), Positives = 38/71 (53%)
 Frame = +2

Query: 287 MMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMVVLQALALT 466
           + I+  I  +  +  L    +  P N  LL  FTV  A+ +G+  ++ +  V+L+A  LT
Sbjct: 79  LWIVLIITPLIVMCPLYYYHQKHPVNYLLLGIFTVALAFAVGLTCAFTSGKVILEAAILT 138

Query: 467 FAVVFSLTLYT 499
             VV SLT+YT
Sbjct: 139 TVVVLSLTVYT 149



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 25/64 (39%), Positives = 36/64 (56%)
 Frame = +3

Query: 66  LMYAQEDCELGGKESVEDDFAYRNNVMNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFM 245
           L Y ++D E G +E  E         M    E+R  FIRKVY ++  QLLAT+++A+  +
Sbjct: 6   LPYRKDDVETG-REGGERSLY---PTMLESPELRWGFIRKVYSIIAFQLLATIAVASTVV 61

Query: 246 FVEP 257
           FV P
Sbjct: 62  FVRP 65


>At4g14730.1 68417.m02265 transmembrane protein-related low
           similarity to transmembrane protein OTMP [Ovis aries]
           GI:9965379
          Length = 235

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 21/44 (47%), Positives = 28/44 (63%)
 Frame = +3

Query: 144 MNAEREIRLAFIRKVYGLLTVQLLATVSIAAVFMFVEPYRHLYT 275
           M    E+R AFIRK+Y +L++QLL TV ++AV  FV P     T
Sbjct: 18  MKESSELRWAFIRKLYSILSLQLLVTVGVSAVVYFVRPIPEFIT 61



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 23/79 (29%), Positives = 41/79 (51%)
 Frame = +2

Query: 263 TFIHTNNWMMIIAFILSMGTLIALIVKRRDSPANLYLLAAFTVIQAYTIGVVVSYYNTMV 442
           T  H    +  +  +L +  L  L+   +  P N  +L+ FT+  ++++G+  S     +
Sbjct: 61  TETHRGLAVFFVILLLPLLLLWPLLAFEKKHPINCIVLSIFTLSISFSVGICCSLSQGRI 120

Query: 443 VLQALALTFAVVFSLTLYT 499
           VL+A  LT  +VF LT+YT
Sbjct: 121 VLEAAILTAVMVFGLTIYT 139


>At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At3g25690,
           At5g61090 [Arabidopsis thaliana]
          Length = 681

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
 Frame = -3

Query: 708 KMYSSGXQDPHHLVRVXNEEH---AEEYRAD--DGQSHFEGGALHHQLKKTPQNENCQTS 544
           K +S G +  HH +     EH   A+++  D      H EG    H++      E+ +T 
Sbjct: 200 KDHSEGFETEHHRIECFETEHEIDADDHIEDFETEHHHIEGLETEHEIDANDHIEDFETE 259

Query: 543 YEHV 532
           + H+
Sbjct: 260 HHHI 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,281,325
Number of Sequences: 28952
Number of extensions: 356986
Number of successful extensions: 873
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)