Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0024
         (476 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    71   7e-14
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    28   0.64 
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...    25   7.9  
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    25   7.9  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 71.3 bits (167), Expect = 7e-14
 Identities = 53/148 (35%), Positives = 67/148 (45%), Gaps = 3/148 (2%)
 Frame = +3

Query: 30  ALLSVSDKTGLLSLAKSLSECGLQLIASXGTATXASE---RWPHSSRCVGHHESTGDARR 200
           ALLSV DKTGLL LAK+L+  G++L+ S GTA    E        S      E  G   +
Sbjct: 3   ALLSVYDKTGLLELAKALTSKGVKLLGSGGTAKMIRESGMEVADVSSITNAPEILGGRVK 62

Query: 201 SGENFTSSGTCWDLSSIXDSDQEDMKRQKYEMISVVVXXLYPFXXXXXXXXXXXXXXXXN 380
           +       G    L+    SD++D+  Q  E I +VV  LYPF                 
Sbjct: 63  TLHPAVHGGI---LARDIPSDEKDLVEQSIEKIDIVVCNLYPFRETIAKPNVTIPEAVEE 119

Query: 381 IDIGXVTLLRAQPRTTXGSPFVCXPADY 464
           IDIG VTLLRA  +       +  PADY
Sbjct: 120 IDIGGVTLLRAAAKNHARVTILSDPADY 147



 Score = 60.1 bits (139), Expect = 2e-10
 Identities = 26/38 (68%), Positives = 31/38 (81%)
 Frame = +1

Query: 127 RXLRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGI 240
           + +R +G+ V DVS IT APE+LGGRVKTLHPAVH GI
Sbjct: 35  KMIRESGMEVADVSSITNAPEILGGRVKTLHPAVHGGI 72


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 147 PHSSRCVGHHESTGDARRSGENFTSSGTCWD 239
           PHS    GH +ST  +  S  N  S GT +D
Sbjct: 247 PHSHSPAGHQQSTPKSTLSKTNENSEGTLYD 277


>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 9   RGVNGKLALLSVSDKTGLLSLAKSLSEC 92
           R VN  LAL+++  +       KS+SEC
Sbjct: 144 RRVNQALALITIGAREAAFRNVKSISEC 171


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 9   RGVNGKLALLSVSDKTGLLSLAKSLSEC 92
           R VN  LAL+++  +       KS+SEC
Sbjct: 144 RRVNQALALITIGAREAAFRNVKSISEC 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,536,130
Number of Sequences: 5004
Number of extensions: 24130
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 184476110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)