Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0024
(476 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0703 + 6212409-6212456,6212661-6212742,6214031-6214106,621... 50 1e-06
09_04_0652 - 19227686-19227926,19229368-19232294 33 0.16
03_02_0505 + 8981856-8982879,8983014-8983129,8985407-8985994,898... 29 1.5
11_06_0257 + 21746643-21748091 29 1.9
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241 29 2.6
06_03_0473 + 21190878-21191188,21191269-21192355,21192972-211931... 28 3.4
03_01_0112 + 902459-902770,903275-903280 28 4.5
07_03_1041 + 23468867-23469215,23469231-23469348,23470920-234710... 27 5.9
>08_01_0703 +
6212409-6212456,6212661-6212742,6214031-6214106,
6214498-6214594,6214760-6214862,6214973-6215103,
6215285-6215462,6215528-6215715,6215945-6216154,
6216231-6216578,6216660-6216786,6217304-6217455
Length = 579
Score = 49.6 bits (113), Expect = 1e-06
Identities = 23/36 (63%), Positives = 25/36 (69%)
Frame = +1
Query: 133 LRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGI 240
L AG+ V V IT PEML GRVKTLHP+VH GI
Sbjct: 82 LEAAGVNVTKVEQITNFPEMLDGRVKTLHPSVHGGI 117
Score = 39.1 bits (87), Expect = 0.002
Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 6/157 (3%)
Frame = +3
Query: 24 KLALLSVSDKTGLLSLAKSLSECGLQLIASXGTATXASERWPHSSRC--VGHHESTGDAR 197
K AL+S+SDKT L L L G +I++ GTA+ + ++ + + D R
Sbjct: 46 KQALISLSDKTDLAYLGNGLQALGFSIISTGGTASSLEAAGVNVTKVEQITNFPEMLDGR 105
Query: 198 RSGENFTSSGTCWDLSSIXDSDQEDMKRQKYE----MISVVVXXLYPFXXXXXXXXXXXX 365
+ + G + DQE + E VVV LYPF
Sbjct: 106 VKTLHPSVHG-----GILARRDQEHHLKALNEHGIGTFDVVVVNLYPFYNKVTSGVISFE 160
Query: 366 XXXXNIDIGXVTLLRAQPRTTXGSPFVCXPADYDAVV 476
NIDIG T++RA + + DY A++
Sbjct: 161 DGIENIDIGGPTMIRAAAKNHKDVLVMVDHEDYPALL 197
>09_04_0652 - 19227686-19227926,19229368-19232294
Length = 1055
Score = 32.7 bits (71), Expect = 0.16
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +3
Query: 75 KSLSECGLQLIASXGTATXASERWPHSSRCVGHHESTGDARRSGENFTSSGTCWDLSSIX 254
++++E LI + SE+ P S C S + ++G + GTCW L I
Sbjct: 427 QTVAEGNNSLIPGSESGQVVSEKEPEPSECSESCASVPNLEQTGTSNVEDGTCW-LDYID 485
Query: 255 DSDQ 266
D+D+
Sbjct: 486 DADE 489
>03_02_0505 +
8981856-8982879,8983014-8983129,8985407-8985994,
8986091-8986192
Length = 609
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +2
Query: 56 GSTLVSKEPVGMWPAVDCQXRYR----HGRFGTLASQFKMCR 169
G + ++PVG WPA C YR RFG AS +M R
Sbjct: 129 GHVWLDEQPVGPWPAATCPP-YRVSADASRFGDRASASRMAR 169
>11_06_0257 + 21746643-21748091
Length = 482
Score = 29.1 bits (62), Expect = 1.9
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 192 HLRCSRDVRHILNCEASVPKRPWRYRXWQST 100
HL C++ R+++N + WR+R W S+
Sbjct: 300 HLPCAQPCRYLVNTPSGELLHVWRFRQWVSS 330
>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
Length = 1445
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 162 CVGHHESTGDARRSGENFTSSGTCWDLSSIXDSDQEDMKRQKYEMI 299
C +E TG ++F +GT WDL +D +R+ +E +
Sbjct: 822 CPDLYEQTGTGDGQSQDFHINGTVWDLIPGVITDMYQHQREAFEFM 867
>06_03_0473 +
21190878-21191188,21191269-21192355,21192972-21193194,
21193286-21193356,21193385-21193441,21193442-21194056,
21194168-21194237,21194470-21194745,21194916-21195130,
21195224-21195529,21195750-21195813,21195902-21196141,
21196306-21196415
Length = 1214
Score = 28.3 bits (60), Expect = 3.4
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +3
Query: 21 GKLALLSVSDKTGLLSL--AKSLSECGLQLIASXGTATXASERWPHSSRCVGHHESTGDA 194
G L+ LS S LL L +K+L + LIAS A ASER+ + GH + G
Sbjct: 36 GVLSRLSFSWLNPLLRLGRSKALDLADVPLIASEDGAARASERFAEAWSLHGHGKDGGGG 95
Query: 195 RR 200
R
Sbjct: 96 GR 97
>03_01_0112 + 902459-902770,903275-903280
Length = 105
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 201 TSEHLRCSRDVRHILNCEASVPKRPWRYR 115
T+ LR RD RH+ CE+ VPK R++
Sbjct: 58 TATRLRL-RDGRHLAYCESGVPKEEARFK 85
>07_03_1041 + 23468867-23469215,23469231-23469348,23470920-23471041,
23471074-23471532,23474675-23474949,23475179-23475315,
23475353-23475405,23475456-23475516,23475606-23475707,
23476380-23476488,23476568-23476693,23476986-23477037,
23477236-23477317,23477395-23477488,23478166-23478262,
23478605-23478698,23479458-23479530,23480198-23480371,
23480526-23480648,23481396-23481533,23482270-23482446
Length = 1004
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 102 LIASXGTATXASERWPHSSRCVGHHESTGDARRSGENFTSSGTCWD 239
L A+ A+ + W + +S D RRSG +G C D
Sbjct: 957 LTATGAMASFGMQSWEITVHVSSRFQSPADLRRSGARMACNGGCTD 1002
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,363,455
Number of Sequences: 37544
Number of extensions: 197481
Number of successful extensions: 551
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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