Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0024
         (476 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical pr...    83   8e-17
AL032629-1|CAA21557.1|  399|Caenorhabditis elegans Hypothetical ...    28   3.0  

>U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical
           protein C55F2.1b protein.
          Length = 594

 Score = 83.4 bits (197), Expect = 8e-17
 Identities = 58/157 (36%), Positives = 78/157 (49%), Gaps = 4/157 (2%)
 Frame = +3

Query: 18  NGK-LALLSVSDKTGLLSLAKSLSECGLQLIASXGTATXASERW--PHSSRCVGHH-EST 185
           +GK LA++SVSDKTGL+ LA  L   GL LIAS GTA    ++    H    V    E  
Sbjct: 3   DGKSLAIISVSDKTGLIPLAHGLVSAGLTLIASGGTAKAIRDQGIDVHDVADVTKFPEML 62

Query: 186 GDARRSGENFTSSGTCWDLSSIXDSDQEDMKRQKYEMISVVVXXLYPFXXXXXXXXXXXX 365
           G   ++       G    L+   +SD++D+++     +SVVV  LYPF            
Sbjct: 63  GGRVKTLHPAVHGGI---LARDTESDRKDLEKHNISFVSVVVCNLYPFKKTVQSKDCSVE 119

Query: 366 XXXXNIDIGXVTLLRAQPRTTXGSPFVCXPADYDAVV 476
               NIDIG VTLLRA  +       +C PADYD ++
Sbjct: 120 EAVENIDIGGVTLLRAAAKNHERVSVICDPADYDHII 156



 Score = 60.9 bits (141), Expect = 5e-10
 Identities = 25/38 (65%), Positives = 32/38 (84%)
 Frame = +1

Query: 127 RXLRNAGLTVQDVSDITRAPEMLGGRVKTLHPAVHAGI 240
           + +R+ G+ V DV+D+T+ PEMLGGRVKTLHPAVH GI
Sbjct: 40  KAIRDQGIDVHDVADVTKFPEMLGGRVKTLHPAVHGGI 77


>AL032629-1|CAA21557.1|  399|Caenorhabditis elegans Hypothetical
           protein Y102F5A.1 protein.
          Length = 399

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 109 AINCRPHSDRLFANESRPVLSETLRRASFPLTPL 8
           A+NC+P S+ L  +   P L  +     FPLT L
Sbjct: 167 ALNCQPSSNNLLTSVIGPPLRRSASALLFPLTDL 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,879,991
Number of Sequences: 27780
Number of extensions: 146988
Number of successful extensions: 313
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 871571276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)