Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0024
         (476 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    26   0.24 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.0  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
 Frame = +1

Query: 106 LPVAVPPRXLRNAGLTVQDVSDIT---RAPEMLGGRVKTLHPAV 228
           +P   PP   +N  +   D S +     AP MLGGR  T +  V
Sbjct: 312 MPCTQPPSAPQNLTVNFVDQSTVFLSWNAPHMLGGRTDTTYRVV 355


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 268 SWSESIIELRSQHVPLDVKF 209
           S++ S+  L ++H PL VKF
Sbjct: 307 SFNFSMAALATEHTPLSVKF 326


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/36 (19%), Positives = 18/36 (50%)
 Frame = -3

Query: 231 MYRWM*SFHPTSEHLRCSRDVRHILNCEASVPKRPW 124
           ++RW+   +  + H+  + D+ + L       ++PW
Sbjct: 58  LWRWIRLTYGQTNHISLTLDLEYELVENLQANEKPW 93


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.6 bits (41), Expect = 9.0
 Identities = 7/36 (19%), Positives = 18/36 (50%)
 Frame = -3

Query: 231 MYRWM*SFHPTSEHLRCSRDVRHILNCEASVPKRPW 124
           ++RW+   +  + H+  + D+ + L       ++PW
Sbjct: 96  LWRWIRLTYGQTNHISLTLDLEYELVENLQANEKPW 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,327
Number of Sequences: 438
Number of extensions: 1807
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12928545
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)