Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0023
         (542 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0288 + 3824337-3826385                                           31   0.79 
01_01_0412 - 3099509-3099634,3099758-3099904,3099991-3100089,310...    30   1.0  
01_06_1760 - 39697079-39697162,39697280-39697340,39697415-396974...    29   2.4  
08_02_1144 + 24670224-24670607,24670723-24670928,24671211-246713...    29   3.2  
01_06_1373 - 36729498-36729950,36730024-36730306,36730592-36730605     28   5.5  
08_02_0685 + 20039318-20040433,20040574-20040982,20042906-200429...    27   9.7  
07_03_1188 + 24671022-24672482                                         27   9.7  
04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814           27   9.7  
02_05_1210 - 34954006-34955412                                         27   9.7  

>04_01_0288 + 3824337-3826385
          Length = 682

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 10  HEGRYRMLKDMVSHKILKTKSEISALTDFLDWLEKE 117
           H   +++ K   SH   KT +++S L  F DWL+ +
Sbjct: 391 HSCYHKITKATTSHHWFKTLNDLSTLVGFADWLDMQ 426


>01_01_0412 -
           3099509-3099634,3099758-3099904,3099991-3100089,
           3100171-3100602,3101121-3101599,3101683-3101728
          Length = 442

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = -2

Query: 541 LSFEDLL*IGEASSSVCTGL 482
           +S+EDLL +GE+  +VCTGL
Sbjct: 349 MSYEDLLALGESIGNVCTGL 368


>01_06_1760 -
           39697079-39697162,39697280-39697340,39697415-39697479,
           39697579-39697860,39697938-39698012,39698121-39698195,
           39698343-39698399,39698653-39698726,39698912-39699055,
           39699608-39699662,39700027-39700149,39700276-39700320,
           39701068-39701160,39701249-39701662
          Length = 548

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -2

Query: 529 DLL*IGEASSSVCTGL---AHTLAVSTMSLLAERLSPEALT 416
           +LL + E SS +CTG+      L +  +S++A +L+ E LT
Sbjct: 222 NLLQVSEKSSQICTGVHCKCQQLLIGGISIMAGKLTAEQLT 262


>08_02_1144 +
           24670224-24670607,24670723-24670928,24671211-24671310,
           24671539-24672864
          Length = 671

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -2

Query: 514 GEASSSVCTGLAHTLAVSTMSLLAERLSPEALTSCCSPCARCSTIL*AAVARSMALST 341
           GEAS S   GL  +L  + +  +  RL  EA    CS  + C  +  AA A   A+++
Sbjct: 70  GEASGSAARGLVESLPEALLVEVVVRLELEA---ACSAASSCRALRAAAAAAFSAVTS 124


>01_06_1373 - 36729498-36729950,36730024-36730306,36730592-36730605
          Length = 249

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +1

Query: 85  LTDFLDWLEKEKGDG 129
           L DF DW+EKEK +G
Sbjct: 129 LEDFEDWIEKEKNEG 143


>08_02_0685 +
           20039318-20040433,20040574-20040982,20042906-20042973,
           20043336-20043518,20043641-20043964,20045653-20045694
          Length = 713

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +3

Query: 363 ATAAYKIVEHLAQGEQQEVSASGESLSASKDMVETARVWARPVHTELEAS 512
           A A  K V   A+      +A   S++ +KD+ E A  WA       EA+
Sbjct: 190 AVAVAKAVAEAAEAVAVPKAALEASMAVAKDLAEAAAKWAAEAKAAAEAA 239


>07_03_1188 + 24671022-24672482
          Length = 486

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 148 HEPRRFSPTMLLEALTRYDLLDRFNSI 228
           H P   S ++L+E LTR++L DR N++
Sbjct: 394 HAPGTKSYSLLIEKLTRHNLGDRANAL 420


>04_01_0278 + 3700974-3701672,3714653-3714841,3714954-3715814
          Length = 582

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 46  SHKILKTKSEISALTDFLDWLEKE 117
           SH   KT +++S L  F DWL+ +
Sbjct: 303 SHHWFKTLNDLSTLVGFADWLDMQ 326


>02_05_1210 - 34954006-34955412
          Length = 468

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 339 TESPRPVAHEPTLAARLTSLLPCIY 265
           T  P  +  +PTLAA  T LLP  Y
Sbjct: 34  TPIPPSILSDPTLAAAATGLLPAAY 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,235,951
Number of Sequences: 37544
Number of extensions: 274418
Number of successful extensions: 986
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)