Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0023
(542 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_57460| Best HMM Match : Folate_rec (HMM E-Value=0.03) 33 0.20
SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45) 29 3.2
SB_23149| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_56138| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.3
SB_6664| Best HMM Match : Lac_bphage_repr (HMM E-Value=9.1) 27 7.5
SB_49339| Best HMM Match : Lac_bphage_repr (HMM E-Value=4.3) 27 7.5
SB_34647| Best HMM Match : COLFI (HMM E-Value=1.5e-13) 27 9.9
SB_24638| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_15349| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09) 27 9.9
SB_34416| Best HMM Match : Peptidase_C1 (HMM E-Value=2e-09) 27 9.9
>SB_57460| Best HMM Match : Folate_rec (HMM E-Value=0.03)
Length = 190
Score = 32.7 bits (71), Expect = 0.20
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = +1
Query: 298 CECWLVCYWTRTLCQWTAPSNGQQLLIRLSNISHKVNSKK*VPQVRVSQPVKTWWRRQGC 477
C C ++ WT + A S GQQ +IR S ++ + + VP+ S TW+R + C
Sbjct: 3 CMCRVLLLWTLVNASFLALSEGQQ-IIRASQCTYYGSGR--VPEEAYSLSNCTWFRERSC 59
>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
Length = 671
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +1
Query: 424 PQVRVSQPVKT---WWRRQGCGQGLYTQN*KPRQSKEDPRKT 540
P + S P K WW + LYT+ + SK P+KT
Sbjct: 11 PSIMTSSPAKANYKWWETDDKTKRLYTELIAEKLSKSSPKKT 52
>SB_23149| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +2
Query: 248 AMPGCR*MQGNSEVSLAASVGSCATGRGLSVSGQRHRTGNSC 373
A GC G S ++++G+CA G G S + Q GNSC
Sbjct: 321 AATGCTNQYGGSGGIASSTIGACAGGGG-SSNCQAGNGGNSC 361
>SB_56138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 28.3 bits (60), Expect = 4.3
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = -3
Query: 507 LLVLCVQALPTPLPSPPCLYWLRD 436
+L +C+Q+ P L + PC W D
Sbjct: 295 VLFICIQSCPLTLQAQPCSVWTHD 318
>SB_6664| Best HMM Match : Lac_bphage_repr (HMM E-Value=9.1)
Length = 122
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 25 RMLKDMVSHKILKTKSEISALTDFLDWLEKEKGDGSV 135
+M +S LK+K + LT+ +W++KE G ++
Sbjct: 52 KMFDAKLSQSALKSKHDPRRLTEHQEWVQKEMGSMNI 88
>SB_49339| Best HMM Match : Lac_bphage_repr (HMM E-Value=4.3)
Length = 122
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 25 RMLKDMVSHKILKTKSEISALTDFLDWLEKEKGDGSV 135
+M +S LK+K + LT+ +W++KE G ++
Sbjct: 52 KMFDAKLSQSALKSKHDPRRLTEHQEWVQKEMGSMNI 88
>SB_34647| Best HMM Match : COLFI (HMM E-Value=1.5e-13)
Length = 143
Score = 27.1 bits (57), Expect = 9.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 112 KEKGDGSVILIYHEPRRFSPTMLLEALTRYD 204
K +GD +I P++F PT++L T D
Sbjct: 68 KLRGDNDLIFHAKSPKKFQPTVILNECTTKD 98
>SB_24638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 94
Score = 27.1 bits (57), Expect = 9.9
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Frame = +1
Query: 22 YRMLKDMVSHKILKTKSEI-----SALTDFLDWLEK--EKGDGSVILIYHE 153
Y + D V + LK K+ I ++++LDWLE+ EKGD ++ I E
Sbjct: 34 YEAVLDDVEKEGLKPKANIWIRDAVVISEYLDWLEREVEKGDNNLTEITGE 84
>SB_15349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 869
Score = 27.1 bits (57), Expect = 9.9
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +1
Query: 358 NGQQLLIRLSNISHKVNSKK*VPQVRVSQPVKTWWRRQGCGQ 483
+G+ I++ I+H NS + P R+ VKT +GCGQ
Sbjct: 745 DGEVQTIQIPEITHS-NSMRFFPPGRIMHVVKTVSVSRGCGQ 785
>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
Length = 787
Score = 27.1 bits (57), Expect = 9.9
Identities = 12/23 (52%), Positives = 13/23 (56%)
Frame = -1
Query: 137 MTLPSPFSFSNQSRKSVKADISD 69
+T P PFSF N SRK D D
Sbjct: 407 VTKPEPFSFDNGSRKRKHEDSGD 429
>SB_34416| Best HMM Match : Peptidase_C1 (HMM E-Value=2e-09)
Length = 817
Score = 27.1 bits (57), Expect = 9.9
Identities = 19/64 (29%), Positives = 26/64 (40%)
Frame = +1
Query: 151 EPRRFSPTMLLEALTRYDLLDRFNSIVAGFTDSYAWLQINARQQ*SQSRCECWLVCYWTR 330
EP T+LLE + RYDL S +S A + Q S C+ + +
Sbjct: 533 EPELIGDTLLLECVDRYDLAAMVGSDAVNVVESLAGKVLELPPQGIPS-CDSDIYSIALQ 591
Query: 331 TLCQ 342
LCQ
Sbjct: 592 LLCQ 595
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,234,124
Number of Sequences: 59808
Number of extensions: 310761
Number of successful extensions: 864
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1239956166
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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