Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0023
         (542 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   3.5  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    22   4.6  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    22   4.6  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   4.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   6.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.1  

>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 519 RLARLLVLCVQALPTPLPSPPCL 451
           RLA L+++ V  L   + SPP L
Sbjct: 154 RLAGLMIVAVWVLAGAITSPPLL 176


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 442 ERLSPEALTSCCSPCA 395
           +R  P+AL + CSPC+
Sbjct: 64  KRNLPDALENECSPCS 79


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 442 ERLSPEALTSCCSPCA 395
           +R  P+AL + CSPC+
Sbjct: 64  KRNLPDALENECSPCS 79


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 328 RTLCQWTAPSNGQQLLIRLSNISHKVNSKK*VPQVRV 438
           R  C    P  G Q L  +     K+N++  VP VR+
Sbjct: 131 RLTCGPVMPQGGVQALEAMLYTLDKLNTQDIVPGVRI 167


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/40 (27%), Positives = 16/40 (40%)
 Frame = +1

Query: 265 INARQQ*SQSRCECWLVCYWTRTLCQWTAPSNGQQLLIRL 384
           IN  ++    +   WL   WT    QW     G   ++RL
Sbjct: 64  INVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRL 103


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 276 PCIYLQPGIAVSESC 232
           PC YL   +AVS+ C
Sbjct: 75  PCNYLLVSLAVSDLC 89


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 396  AQGEQQEVSASGESLSASKDMVE 464
            A  +QQ+   SGE +   +D VE
Sbjct: 1575 ANSQQQQQQQSGEPVIGMEDSVE 1597


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,438
Number of Sequences: 438
Number of extensions: 2642
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)